View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8899_low_32 (Length: 469)
Name: NF8899_low_32
Description: NF8899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8899_low_32 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 17 - 451
Target Start/End: Complemental strand, 2572683 - 2572249
Alignment:
| Q |
17 |
catcagagagagccgagtctcccctccacttcactctttggtccttaggcaactttcctgagcgttgtccttcaaaaaacatgatggctttgccaagagc |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2572683 |
catcagagagagccgagtctcccctccacttcactctttggtccttaggcaactttcctgagcgttgtccttcaaaaaacaagatggctttgccaagagc |
2572584 |
T |
|
| Q |
117 |
atctgcatagtcgtaattagccgaggaatttgtactaatgaattcatcatccgttatggctaataatccattccaactacccatgacaaataacaagatc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2572583 |
atctgcatagtcgtaattagccgaggaatttgtactaatgaattcatcatccgttatggctaataatccattccaactacccatgacaaataacaagatc |
2572484 |
T |
|
| Q |
217 |
aaactattgatcaacaaactgcacctcatgatggttctattaagtttctaagtctgcatgatattcaacgaaactttctggtatttatagtaggaaaaaa |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
2572483 |
aaactattgatcaacaaactgcacctcatgatggttctattaagtttctaagtctgcatgatattcaactaaactttctggtatttatagtaggaaaaaa |
2572384 |
T |
|
| Q |
317 |
tatggcagttgcctaactatgcctaactaccattacctcaaataggataggaatgtacaaagtagtgaatgtgtatgagaaagattataaaatatggaat |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2572383 |
tatggcagttgcctaactatgcctaactaccattacctcaaataggataggaatgtacaaagtagtgcatgtgtatgagaaagattataaaatatggaat |
2572284 |
T |
|
| Q |
417 |
ggggggtaacttgacgtgtacatataacaattaaa |
451 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
2572283 |
ggggggtaacttgacgtgtacatataacaattaaa |
2572249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 2562155 - 2561919
Alignment:
| Q |
17 |
catcagagagagccgagtctcccctccacttcactctttggtccttaggcaactttcctgagcgttgtccttcaaaaaacatgatggctttgccaagagc |
116 |
Q |
| |
|
|||||||||| || || |||||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
2562155 |
catcagagagtgctgaatctcccctccacttcactctttggtctttaggcaatttccctgagcgttgtccttcaaaaaacaagattgctttgccaagagc |
2562056 |
T |
|
| Q |
117 |
atctgcatagtcgtaattagccgaggaatttgtactaatgaattcatcatccgttatggctaataatcc---attccaactacccatgacaaataacaag |
213 |
Q |
| |
|
||||||||||| |||| | | |||||| || ||||||| ||||| |||||| |||| ||||||| || |||| ||||| |||| |||| ||||| |
|
|
| T |
2562055 |
atctgcatagttgtaacttgatgaggaacttttactaattaattcctcatccattattgctaatataccattattcttactactcatggcaaaccacaag |
2561956 |
T |
|
| Q |
214 |
atcaaactattgatcaacaaactgcacctcatgatgg |
250 |
Q |
| |
|
|| |||| | | |||||||||||||||| |||||||| |
|
|
| T |
2561955 |
attaaaccacttatcaacaaactgcaccccatgatgg |
2561919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University