View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8899_low_35 (Length: 456)
Name: NF8899_low_35
Description: NF8899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8899_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 183; Significance: 8e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 8e-99
Query Start/End: Original strand, 36 - 308
Target Start/End: Original strand, 4815139 - 4815413
Alignment:
| Q |
36 |
ctctctgtcctataacactttttccgtctctctcccttagcactctctgccca-gaaccctcaattcgtccaaattctctcctgcagaacagatttgaaa |
134 |
Q |
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|||||||||||| |||||||||| |||||||||||||| |||||||||||||| ||||||| ||||| ||||||||||||| |||| |||| |||||||| |
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| T |
4815139 |
ctctctgtcctagaacacttttttcgtctctctcccttggcactctctgcccaagaaccctaaattcttccaaattctctcttgcacaacatatttgaaa |
4815238 |
T |
|
| Q |
135 |
ttgaaattgatatttggggttcaagtaattaggttgctctctctttttcaaattcgcttttatggttctctctccacctcaaaaccgcagttctacaagc |
234 |
Q |
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||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| || |||||||||||||||||||||||| |||||||||||||| |
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| T |
4815239 |
ttgaaattgatatttggggttcaagtatttaggttgctcactctttttcaaattcgtttgtatggttctctctccacctcaaaattgcagttctacaagc |
4815338 |
T |
|
| Q |
235 |
tagaatcat-gatatggtttgtgagttttgttctccccgttttaatttatgtgtgttgtggttatgtgtctaatt |
308 |
Q |
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||||||||| ||| ||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
4815339 |
tagaatcatcgatcaggtttgtgagtttcgttctccccgttttgatttatgtgtgttctggttatgtgtctaatt |
4815413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 149; Significance: 2e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 36 - 307
Target Start/End: Original strand, 23517448 - 23517727
Alignment:
| Q |
36 |
ctctctgtcctataacactttttccgtctctctcccttagcactctctgccca-gaaccctcaattcgtccaaattctctcctgcagaacagatttgaaa |
134 |
Q |
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|||||||||||| |||||||||| |||||||||||||| |||||||||||||| ||||||| ||||| ||||||||||||| |||| |||| |||||||| |
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| T |
23517448 |
ctctctgtcctagaacacttttttcgtctctctcccttggcactctctgcccaagaaccctaaattcttccaaattctctcttgcacaacatatttgaaa |
23517547 |
T |
|
| Q |
135 |
ttgaaattg------atatttggggttcaagtaattaggttgctctctctttttcaaattcgcttttatggttctctctccacctcaaaaccgcagttct |
228 |
Q |
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| T |
23517548 |
ttgaaattgatattgatatttggggttcaagtatttaggttgctcactctttttcaaattcgtttgtacggttctcgctccacctcaaaattgcagttct |
23517647 |
T |
|
| Q |
229 |
acaagctagaatcat-gatatggtttgtgagttttgttctccccgttttaatttatgtgtgttgtggttatgtgtctaat |
307 |
Q |
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||||||||||||||| ||| ||||||||||||| |||||||| |||| ||||||||||||| |||||||||||||||| |
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| T |
23517648 |
acaagctagaatcatcgatcaggtttgtgagtttcattctccccattttgatttatgtgtgttctggttatgtgtctaat |
23517727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 36 - 307
Target Start/End: Original strand, 23486095 - 23486368
Alignment:
| Q |
36 |
ctctctgtcctataacactttttccgtctctctcccttagcactctctgccca-gaaccctcaattcgtccaaattctctcctgcagaacagatttgaaa |
134 |
Q |
| |
|
|||||||||||| |||| ||||| |||||||||||||| |||||||||||||| ||||||| ||||| || |||||||||| |||| |||| |||||||| |
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| T |
23486095 |
ctctctgtcctagaacatttttttcgtctctctcccttggcactctctgcccaagaaccctaaattcttcgaaattctctcttgcacaacatatttgaaa |
23486194 |
T |
|
| Q |
135 |
ttgaaattgatatttggggttcaagtaattaggttgctctctctttttcaaattcgcttttatggttctctctccacctcaaaaccgcagttctacaagc |
234 |
Q |
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||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| || || | ||||||||||||||| ||| |||||||||||||| |
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| T |
23486195 |
ttgaaattgatatttggggttcaagtatttaggttgctcactctttttcaaattcgtttgtacgattctctctccacctcgaaattgcagttctacaagc |
23486294 |
T |
|
| Q |
235 |
tagaatcat-gatatggtttgtgagttttgttctccccgttttaatttatgtgtgttgtggttatgtgtctaat |
307 |
Q |
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||||||||| ||| ||||||| ||||| ||||| || |||| ||||||||||||| |||||||||||||||| |
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| T |
23486295 |
tagaatcatcgatcaggtttgtaagtttcattctcaccattttgatttatgtgtgttctggttatgtgtctaat |
23486368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 297 - 352
Target Start/End: Complemental strand, 37686390 - 37686335
Alignment:
| Q |
297 |
atgtgtctaattgtgtcactttttatgtttctagcagttttatcatgatttttgaa |
352 |
Q |
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||||||||||||||||| ||||||||||||| ||||||||| |||||||||||| |
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| T |
37686390 |
atgtgtctaattgtgtctctttttatgtttcaagcagtttttagatgatttttgaa |
37686335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 297 - 337
Target Start/End: Original strand, 7497351 - 7497391
Alignment:
| Q |
297 |
atgtgtctaattgtgtcactttttatgtttctagcagtttt |
337 |
Q |
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| T |
7497351 |
atgtgtccaattgtgtctctttttatgtttcaagcagtttt |
7497391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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