View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8899_low_38 (Length: 453)
Name: NF8899_low_38
Description: NF8899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8899_low_38 |
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Alignment Details
Target: chr7 (Bit Score: 147; Significance: 2e-77; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 202 - 363
Target Start/End: Original strand, 23627232 - 23627396
Alignment:
| Q |
202 |
tttcaataagaagtctcatcatcggtcataaactattatttccctacaggacaatactctgagtttactttgcgaaaacattttcaatttttatattcaa |
301 |
Q |
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| T |
23627232 |
tttcaataagaagtctcatcatcggtcataaactattatttccctacaggacaatactttgagtttactttgcgaaaacattttcaatttttatattcaa |
23627331 |
T |
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| Q |
302 |
aaatatgtgtttattttgatttgttaatagaaaaaagtgagtctc---ttgagaggttctcctat |
363 |
Q |
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| T |
23627332 |
aaatatgtgtttattttgatttgttaatagaaaaaagtgagtctcttgttgagaggttctcctat |
23627396 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 23626674 - 23626840
Alignment:
| Q |
18 |
tttgtgactcatacttgagtagaagattgttggaatcacaaatgggagtgattagttcaacattaccgctctcggcgctttccgaactccacaacaagta |
117 |
Q |
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| T |
23626674 |
tttgtgactcatacttgagtggaagattgttggaatcacaaattggagtgattagttcaacattaccgctctcggcgcttcccgaactccacaacaaata |
23626773 |
T |
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| Q |
118 |
gtatcagagtcgatggttacaaattaaaggagccg----gtgacaaaagtattcttgacaattatga |
180 |
Q |
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| T |
23626774 |
gtatcagagtcgatggttactaattaaaggggccgactaatgacaaaagtattcttgacaatgatga |
23626840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 398 - 444
Target Start/End: Original strand, 23627407 - 23627453
Alignment:
| Q |
398 |
ctacctggtattcaatcctcttttgaggctgagttttttagtataat |
444 |
Q |
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| T |
23627407 |
ctacctggtattcaatcctcttttgaggctgagttttttagtgtaat |
23627453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 264 - 309
Target Start/End: Complemental strand, 13921454 - 13921409
Alignment:
| Q |
264 |
gtttactttgcgaaaacattttcaatttttatattcaaaaatatgt |
309 |
Q |
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| T |
13921454 |
gtttactttgcgaaaacatttcctatttttattttctaaaatatgt |
13921409 |
T |
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