View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8899_low_40 (Length: 443)
Name: NF8899_low_40
Description: NF8899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8899_low_40 |
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Alignment Details
Target: chr7 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 11 - 288
Target Start/End: Complemental strand, 41431495 - 41431222
Alignment:
| Q |
11 |
cagagatatttgtatttccctcaaatgaattgataggctccataactctccattcattgaagacatgtttctctaattctttcactttcttggtgatatt |
110 |
Q |
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| T |
41431495 |
cagagatatttgtatttccctcaaatgaattgataggctccataactctccattcattgaagacatgtttctctaattctttcactttcttggtgatatt |
41431396 |
T |
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| Q |
111 |
gcgactagctagtgtatttacttatctatctatacacgccgaaattgacttcctccggagatttcgctgtcggtaaaatctttattgagtttattggcca |
210 |
Q |
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| T |
41431395 |
gcgactag----tgtatttacttatctatctatacacgccgaaattgacttcctccggagatttcgctgtcggtaaaatctttattgagtttattggcca |
41431300 |
T |
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| Q |
211 |
tagactttgttttacaccaactacatttaactatttttcttttcatgttacaccatccatcatttggaaatgcaaatg |
288 |
Q |
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| T |
41431299 |
tagactttgttttacaccaactacatttaactatttttcttttcatgttacaccatccatcatttggaaatgcaaatg |
41431222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 359 - 428
Target Start/End: Complemental strand, 41431141 - 41431072
Alignment:
| Q |
359 |
ctaatgtattgattactcatattttcataaaaacttaccatttgacacaccatctgatcgccgttgttag |
428 |
Q |
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| T |
41431141 |
ctaatgtattgattactcatattttcataaaaacttaccatttgacacaccatctgatcgccattgttag |
41431072 |
T |
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