View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8899_low_41 (Length: 438)

Name: NF8899_low_41
Description: NF8899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8899_low_41
NF8899_low_41
[»] chr8 (3 HSPs)
chr8 (172-404)||(31383565-31383800)
chr8 (12-107)||(5196409-5196506)
chr8 (18-107)||(31382881-31382970)
[»] chr4 (2 HSPs)
chr4 (13-105)||(53668386-53668478)
chr4 (15-107)||(35421080-35421172)
[»] chr2 (3 HSPs)
chr2 (13-107)||(9676273-9676367)
chr2 (15-107)||(35739867-35739959)
chr2 (13-107)||(31075148-31075242)
[»] chr1 (2 HSPs)
chr1 (13-107)||(25986460-25986554)
chr1 (17-107)||(18238554-18238644)
[»] chr7 (2 HSPs)
chr7 (13-107)||(5640333-5640428)
chr7 (39-107)||(42132314-42132382)
[»] chr3 (3 HSPs)
chr3 (13-107)||(42710876-42710970)
chr3 (17-107)||(12716846-12716936)
chr3 (13-107)||(49670231-49670325)
[»] chr6 (1 HSPs)
chr6 (16-106)||(10901557-10901647)


Alignment Details
Target: chr8 (Bit Score: 128; Significance: 5e-66; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 172 - 404
Target Start/End: Original strand, 31383565 - 31383800
Alignment:
Q  172 gctaactttaaatatgaatgaatcttttgcaacgaaaaatacataacaaaatacgttcgaataatttaagaggtacaactttattgattcgttcacggca 271  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31383565 gctaactttgaatatgaatgaatcttttgcaacgaaaaatacataacaaaatacgttcgaataatttaagaggtacaactttattgattcgttcacggca 31383664  T
Q  272 ccaaaatcttatgattgtttctgtccttggtttcacc--caaaaggtggtctt-acttannnnnnnnnnnnnnnnnnnnnnnattgaagttaaatttaat 368  Q
    ||||||||||| |||||||||||||||| ||||||||   ||||||||||||| |||||                       ||||||||||||||||||    
T  31383665 ccaaaatcttaagattgtttctgtccttagtttcaccaaaaaaaggtggtcttgacttatttttctgttttttacattttttattgaagttaaatttaat 31383764  T
Q  369 taaaattgacgtcaacatttttcaagtatctccatt 404  Q
    |||||| |||||||||||||||||||||||||||||    
T  31383765 taaaatggacgtcaacatttttcaagtatctccatt 31383800  T

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Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 12 - 107
Target Start/End: Complemental strand, 5196506 - 5196409
Alignment:
Q  12 atggtgttggagtacttatttctctacata--acaatgctcaaagtatgaagctgacatatccagaactcttgtgatgaatgagaaaagtaaagtttc 107  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5196506 atggtgttggagtacttatttctctacatataacaatgctcaaagtatgaagctgacatatccagaactcttgtgatgaatgagaaaagtaaagtttc 5196409  T

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Target: chr8; HSP #3
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 18 - 107
Target Start/End: Original strand, 31382881 - 31382970
Alignment:
Q  18 ttggagtacttatttctctacataacaatgctcaaagtatgaagctgacatatccagaactcttgtgatgaatgagaaaagtaaagtttc 107  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31382881 ttggagtacttatttttctacataacaatgctcaaagtatgaagctgacatatccagaactcttgtgatgaatgagaaaagtaaagtttc 31382970  T

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Target: chr4 (Bit Score: 93; Significance: 4e-45; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 13 - 105
Target Start/End: Original strand, 53668386 - 53668478
Alignment:
Q  13 tggtgttggagtacttatttctctacataacaatgctcaaagtatgaagctgacatatccagaactcttgtgatgaatgagaaaagtaaagtt 105  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53668386 tggtgttggagtacttatttctctacataacaatgctcaaagtatgaagctgacatatccagaactcttgtgatgaatgagaaaagtaaagtt 53668478  T

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Target: chr4; HSP #2
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 15 - 107
Target Start/End: Complemental strand, 35421172 - 35421080
Alignment:
Q  15 gtgttggagtacttatttctctacataacaatgctcaaagtatgaagctgacatatccagaactcttgtgatgaatgagaaaagtaaagtttc 107  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  35421172 gtgttggagtacttatttctctatataacaatgctcaaagtatgaagctaacatatccagaactcttgtgattaatgagaaaagtaaagtttc 35421080  T

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Target: chr2 (Bit Score: 91; Significance: 6e-44; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 13 - 107
Target Start/End: Complemental strand, 9676367 - 9676273
Alignment:
Q  13 tggtgttggagtacttatttctctacataacaatgctcaaagtatgaagctgacatatccagaactcttgtgatgaatgagaaaagtaaagtttc 107  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9676367 tggtgttggagtacttatttttctacataacaatgctcaaagtatgaagctgacatatccagaactcttgtgatgaatgagaaaagtaaagtttc 9676273  T

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Target: chr2; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 15 - 107
Target Start/End: Complemental strand, 35739959 - 35739867
Alignment:
Q  15 gtgttggagtacttatttctctacataacaatgctcaaagtatgaagctgacatatccagaactcttgtgatgaatgagaaaagtaaagtttc 107  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35739959 gtgttggagtatttatttctctacataacaatgctcaaagtatgaagctgacatatccagaactcttgtgatgaatgagaaaagtaaagtttc 35739867  T

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Target: chr2; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 13 - 107
Target Start/End: Original strand, 31075148 - 31075242
Alignment:
Q  13 tggtgttggagtacttatttctctacataacaatgctcaaagtatgaagctgacatatccagaactcttgtgatgaatgagaaaagtaaagtttc 107  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  31075148 tggtgttggagtacttatttctctacatgacaatgctcaaagtatgaagttgacatatccaaaactcttgtgatgaatgagaaaagtaaagtttc 31075242  T

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Target: chr1 (Bit Score: 91; Significance: 6e-44; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 13 - 107
Target Start/End: Original strand, 25986460 - 25986554
Alignment:
Q  13 tggtgttggagtacttatttctctacataacaatgctcaaagtatgaagctgacatatccagaactcttgtgatgaatgagaaaagtaaagtttc 107  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25986460 tggtgttggagtacttatttctctacattacaatgctcaaagtatgaagctgacatatccagaactcttgtgatgaatgagaaaagtaaagtttc 25986554  T

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Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 17 - 107
Target Start/End: Complemental strand, 18238644 - 18238554
Alignment:
Q  17 gttggagtacttatttctctacataacaatgctcaaagtatgaagctgacatatccagaactcttgtgatgaatgagaaaagtaaagtttc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  18238644 gttggagtacttatttctctacataacaatgctcaaagtatgaagctaacatatccagaactcttgtgatgaatgagaaaagtaaagtttc 18238554  T

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Target: chr7 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 13 - 107
Target Start/End: Complemental strand, 5640428 - 5640333
Alignment:
Q  13 tggtgttggagtacttatttctctacataa-caatgctcaaagtatgaagctgacatatccagaactcttgtgatgaatgagaaaagtaaagtttc 107  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5640428 tggtgttggagtacttatttctctacataaacaatgctcaaagtatgaagctgacatatccagaactcttgtgatgaatgagaaaagtaaagtttc 5640333  T

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Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 39 - 107
Target Start/End: Original strand, 42132314 - 42132382
Alignment:
Q  39 ataacaatgctcaaagtatgaagctgacatatccagaactcttgtgatgaatgagaaaagtaaagtttc 107  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  42132314 ataacaatgctcaaagtatgaagctgacatatccataactcttgtgatgaatgagaaaagtaaagtttc 42132382  T

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Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 13 - 107
Target Start/End: Complemental strand, 42710970 - 42710876
Alignment:
Q  13 tggtgttggagtacttatttctctacataacaatgctcaaagtatgaagctgacatatccagaactcttgtgatgaatgagaaaagtaaagtttc 107  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  42710970 tggtgttggagtatttatttctctacataacaatgctcaaagtatgaagctgacatatccagaactctagtgatgaatgagaaaagtaaagtttc 42710876  T

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Target: chr3; HSP #2
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 12716846 - 12716936
Alignment:
Q  17 gttggagtacttatttctctacataacaatgctcaaagtatgaagctgacatatccagaactcttgtgatgaatgagaaaagtaaagtttc 107  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||    
T  12716846 gttggagtacttatttctctacataacaatgctcaaagtatgaaactgacatatcaataactcttgtgatgaatgagaaaagtaaagtttc 12716936  T

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Target: chr3; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 13 - 107
Target Start/End: Complemental strand, 49670325 - 49670231
Alignment:
Q  13 tggtgttggagtacttatttctctacataacaatgctcaaagtatgaagctgacatatccagaactcttgtgatgaatgagaaaagtaaagtttc 107  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||    
T  49670325 tggtgttgaagtacttatttttctacataacaatgctcaaagtatgaagctgaaatatctagaactcttgtgatgagtgagaaaagtaaagtttc 49670231  T

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Target: chr6 (Bit Score: 79; Significance: 9e-37; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 16 - 106
Target Start/End: Original strand, 10901557 - 10901647
Alignment:
Q  16 tgttggagtacttatttctctacataacaatgctcaaagtatgaagctgacatatccagaactcttgtgatgaatgagaaaagtaaagttt 106  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||    
T  10901557 tgttggagtacttatttctttacataacaatgctcaaagtatgaagctcacatatccagaactcttgtgctgaatgagaaaagtaaagttt 10901647  T

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