View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8899_low_43 (Length: 419)
Name: NF8899_low_43
Description: NF8899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8899_low_43 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 52862954 - 52862536
Alignment:
| Q |
1 |
taatgattctgcttctttgcggaacgtagcttcatccatcaatgttgatccatttggaagtctacgaattgatagaaccattccgtcttgatatgaggct |
100 |
Q |
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| T |
52862954 |
taatgattctgcttctttgcggaatgtagcttcatccatcaatgttgatccatttggaagtctacgaattgatagaaccattccgtcttgatatgaggct |
52862855 |
T |
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| Q |
101 |
ttgaaaacaagtccatgttttcctctgcttaaaacgttttcttcatcaaagtttcttgttgcttctaatgtttcagcatatgtgattttgttgttgaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52862854 |
ttgaaaacaagtccatgttttcctctgcttaaaacgttttcttcatcaaagtttcttgttgcttctaatgtttcagcatatgtgattttgttgttgaata |
52862755 |
T |
|
| Q |
201 |
ctatgagttttggtcctccattttcaccacttcctctactgtttctttctccatttgagcctgcacttggactgcgtttcttctcacctgttacgccttc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52862754 |
ctatgagttttggtcctccattttcaccacttcctctactgtttctttctccatttgagcctgcacttggactgcgtttcttctcacctgttacgccttc |
52862655 |
T |
|
| Q |
301 |
tcggagctttcttcgccaccttaagagactataaacatagccacaacaacacaaagctaaaagacatagtcctgcagctgcaacacctatgatgatgatt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52862654 |
tcggagctttcttcgccaccttaagagactataaacatagccacaacaacacaaagctaaaagacatagtcctgcagctgcaacacctatgatgatgatt |
52862555 |
T |
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| Q |
401 |
agtctttttctctttcgtc |
419 |
Q |
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||||||||||||||||||| |
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| T |
52862554 |
agtctttttctctttcgtc |
52862536 |
T |
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