View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8899_low_45 (Length: 416)

Name: NF8899_low_45
Description: NF8899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8899_low_45
NF8899_low_45
[»] chr7 (13 HSPs)
chr7 (18-130)||(5175612-5175724)
chr7 (154-246)||(5175027-5175115)
chr7 (324-403)||(28804882-28804961)
chr7 (325-395)||(4290969-4291039)
chr7 (333-406)||(18312736-18312809)
chr7 (333-398)||(20556675-20556740)
chr7 (322-403)||(21589758-21589839)
chr7 (343-398)||(5174814-5174869)
chr7 (316-403)||(21548587-21548673)
chr7 (333-395)||(31303362-31303424)
chr7 (333-398)||(28805158-28805223)
chr7 (322-398)||(18312966-18313042)
chr7 (325-398)||(31303592-31303665)
[»] chr4 (11 HSPs)
chr4 (326-398)||(14351202-14351274)
chr4 (333-398)||(16583505-16583570)
chr4 (322-403)||(1966728-1966808)
chr4 (329-403)||(17633471-17633545)
chr4 (325-398)||(19596923-19596996)
chr4 (333-403)||(25007632-25007701)
chr4 (329-398)||(9810665-9810734)
chr4 (323-403)||(17633236-17633316)
chr4 (357-397)||(14350997-14351037)
chr4 (359-403)||(24669308-24669352)
chr4 (323-398)||(42908707-42908782)
[»] chr8 (10 HSPs)
chr8 (28-107)||(5179312-5179391)
chr8 (344-407)||(15233138-15233201)
chr8 (333-403)||(24576190-24576260)
chr8 (333-398)||(1251611-1251676)
chr8 (333-398)||(31596704-31596769)
chr8 (325-398)||(38606724-38606797)
chr8 (333-388)||(38606973-38607028)
chr8 (333-403)||(31273692-31273762)
chr8 (326-398)||(5573920-5573992)
chr8 (359-403)||(5322092-5322136)
[»] chr1 (12 HSPs)
chr1 (340-398)||(29677209-29677267)
chr1 (325-386)||(34941701-34941762)
chr1 (330-398)||(13350889-13350957)
chr1 (327-403)||(34490323-34490399)
chr1 (322-403)||(13351020-13351101)
chr1 (322-398)||(29676979-29677055)
chr1 (322-398)||(5855244-5855320)
chr1 (326-403)||(34490091-34490168)
chr1 (329-403)||(5855012-5855085)
chr1 (326-388)||(38952057-38952119)
chr1 (361-398)||(25238616-25238653)
chr1 (335-398)||(517547-517613)
[»] chr5 (12 HSPs)
chr5 (325-398)||(36169302-36169375)
chr5 (326-403)||(33958878-33958954)
chr5 (333-398)||(35922617-35922682)
chr5 (327-398)||(42034896-42034967)
chr5 (329-403)||(43262830-43262904)
chr5 (329-403)||(43461830-43461904)
chr5 (330-398)||(16095519-16095587)
chr5 (344-398)||(7156000-7156054)
chr5 (325-403)||(15221699-15221777)
chr5 (360-398)||(31189512-31189550)
chr5 (322-372)||(43262621-43262671)
chr5 (360-404)||(30704321-30704365)
[»] chr2 (7 HSPs)
chr2 (321-398)||(1400666-1400743)
chr2 (322-403)||(28527217-28527297)
chr2 (323-403)||(30905945-30906025)
chr2 (323-398)||(34175248-34175323)
chr2 (333-403)||(30906181-30906251)
chr2 (338-403)||(45305881-45305946)
chr2 (337-403)||(41212441-41212507)
[»] chr6 (15 HSPs)
chr6 (322-397)||(2835103-2835178)
chr6 (333-403)||(22608270-22608340)
chr6 (329-403)||(24386346-24386420)
chr6 (322-403)||(30056019-30056100)
chr6 (329-398)||(2430507-2430577)
chr6 (329-398)||(20084581-20084650)
chr6 (359-403)||(10304631-10304675)
chr6 (325-403)||(138612-138689)
chr6 (325-403)||(146633-146710)
chr6 (326-387)||(9474536-9474598)
chr6 (322-398)||(9068545-9068624)
chr6 (326-403)||(11108067-11108144)
chr6 (322-398)||(3620653-3620729)
chr6 (328-403)||(7915728-7915803)
chr6 (323-403)||(18980411-18980491)
[»] scaffold1126 (2 HSPs)
scaffold1126 (333-403)||(339-409)
scaffold1126 (325-398)||(104-178)
[»] chr3 (12 HSPs)
chr3 (334-403)||(3823561-3823630)
chr3 (322-403)||(3823786-3823867)
chr3 (326-403)||(19280332-19280409)
chr3 (322-398)||(11510076-11510151)
chr3 (333-388)||(3785871-3785926)
chr3 (333-398)||(9710853-9710918)
chr3 (342-398)||(44080174-44080230)
chr3 (324-403)||(5342011-5342090)
chr3 (333-396)||(31545435-31545498)
chr3 (325-399)||(42637855-42637927)
chr3 (322-403)||(3786096-3786175)
chr3 (335-396)||(11509814-11509875)
[»] scaffold0251 (1 HSPs)
scaffold0251 (329-403)||(10745-10819)


Alignment Details
Target: chr7 (Bit Score: 113; Significance: 4e-57; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 18 - 130
Target Start/End: Complemental strand, 5175724 - 5175612
Alignment:
Q  18 cattagacgtagaagctagaaatgggtgttgttcgaaaatgttacggtgagttagaaattggcagagggtccttccttggcaagagagatatgagtaagg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5175724 cattagacgtagaagctagaaatgggtgttgttcgaaaatgttacggtgagttagaaattggcagagggtccttccttggcaagagagatatgagtaagg 5175625  T
Q  118 atgaggcttcctt 130  Q
    |||||||||||||    
T  5175624 atgaggcttcctt 5175612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 154 - 246
Target Start/End: Complemental strand, 5175115 - 5175027
Alignment:
Q  154 tgtcaaggat-atgcgattccttgatggcggcggtcacctccttactccaacaagcttattcacattttcagcctagacaaggttttaccaagt 246  Q
    |||||||||| ||||||||||||||||||||   |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||    
T  5175115 tgtcaaggattatgcgattccttgatggcgg---tcacctccttactccaacaa-cttattcacattttcagcctagacaa-gttttaccaagt 5175027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 324 - 403
Target Start/End: Original strand, 28804882 - 28804961
Alignment:
Q  324 gcaatgataggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatattgtct 403  Q
    ||||||||||||||||||||||||| ||| || |  ||||||||| |||  |||||||||||||| ||||||||| ||||    
T  28804882 gcaatgataggtagacacccttaatatgtacacccttttgtaccattctagaaaatttcagttaaccaaatatatggtct 28804961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 325 - 395
Target Start/End: Complemental strand, 4291039 - 4290969
Alignment:
Q  325 caatgataggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaata 395  Q
    |||||||||||||| ||| |||||||||  |||||||||||| ||| | ||||||||||||||| ||||||    
T  4291039 caatgataggtagatacctttaatgtgtcaatctctttgtactactttgaaaaatttcagttaaccaaata 4290969  T

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Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 333 - 406
Target Start/End: Original strand, 18312736 - 18312809
Alignment:
Q  333 ggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatattgtctctg 406  Q
    ||||||||||||||| ||||  | | ||||||||||||||| ||||||||| |||| ||||||||| |||||||    
T  18312736 ggtagacacccttaacgtgtatacccctttgtaccactctcgaaaatttcaattaatcaaatatatggtctctg 18312809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 333 - 398
Target Start/End: Original strand, 20556675 - 20556740
Alignment:
Q  333 ggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatat 398  Q
    ||||||||||||||||||||  ||||||||||   |||||| |||||||||||||| |||||||||    
T  20556675 ggtagacacccttaatgtgtatatctctttgtgttactctcgaaaatttcagttaaccaaatatat 20556740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 322 - 403
Target Start/End: Complemental strand, 21589839 - 21589758
Alignment:
Q  322 gagcaatgataggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatattgtct 403  Q
    ||||||| |||| || ||||||||||||||| ||||  ||| ||||||||| ||||||||||||||  ||||||||| ||||    
T  21589839 gagcaataatagctaaacacccttaatgtgtacatccgtttataccactctaaaaaatttcagttatccaaatatatggtct 21589758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 343 - 398
Target Start/End: Original strand, 5174814 - 5174869
Alignment:
Q  343 cttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatat 398  Q
    |||||||||| |||||||||||||||| ||| |||||||||||||| || ||||||    
T  5174814 cttaatgtgtacatctctttgtaccacgctcgaaaatttcagttaatcatatatat 5174869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 316 - 403
Target Start/End: Complemental strand, 21548673 - 21548587
Alignment:
Q  316 taaaaggagcaatgataggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatattgtct 403  Q
    ||||| ||||||||||| ||||||| |||||||||||  || || |||||||| ||| |||||||||||||||  |||||||| ||||    
T  21548673 taaaaagagcaatgataagtagacatccttaatgtgtatat-tccttgtaccattctaaaaaatttcagttaactaaatatatggtct 21548587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 395
Target Start/End: Original strand, 31303362 - 31303424
Alignment:
Q  333 ggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaata 395  Q
    |||||||||||||||||||| ||||  |||||| |||||| |||||||||||| || ||||||    
T  31303362 ggtagacacccttaatgtgtacatccatttgtatcactctgaaaaatttcagtcaaccaaata 31303424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 333 - 398
Target Start/End: Complemental strand, 28805223 - 28805158
Alignment:
Q  333 ggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatat 398  Q
    ||||||||||||||||||||  | | ||||||| |||||| |||||||| |||||| |||||||||    
T  28805223 ggtagacacccttaatgtgtatacccctttgtatcactctgaaaaatttaagttaaccaaatatat 28805158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 322 - 398
Target Start/End: Complemental strand, 18313042 - 18312966
Alignment:
Q  322 gagcaatgataggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatat 398  Q
    ||||||||||| ||| |||| |||||||||  ||   |||||||||||||| ||||||||||| ||| |||||||||    
T  18313042 gagcaatgatacgtaaacactcttaatgtgcacactcctttgtaccactctgaaaaatttcagctaaccaaatatat 18312966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 398
Target Start/End: Complemental strand, 31303665 - 31303592
Alignment:
Q  325 caatgataggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatat 398  Q
    ||||||| |||||||||| ||||||| | ||||  ||| ||||||||  |||||||||||||||  ||||||||    
T  31303665 caatgattggtagacacctttaatgtctacatccttttataccactcaaaaaaatttcagttaacaaaatatat 31303592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 326 - 398
Target Start/End: Complemental strand, 14351274 - 14351202
Alignment:
Q  326 aatgataggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatat 398  Q
    ||||||||||||||||||||||||||||||  ||||||||||||||||||||| || |||||| |||||||||    
T  14351274 aatgataggtagacacccttaatgtgtgcacttctttgtaccactctcaaaaaatttagttaaccaaatatat 14351202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 333 - 398
Target Start/End: Original strand, 16583505 - 16583570
Alignment:
Q  333 ggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatat 398  Q
    ||||||||||||||||| || |||| ||||||||||||||| |||||||||||||| |||||||||    
T  16583505 ggtagacacccttaatgcgtacatccctttgtaccactctcgaaaatttcagttaaccaaatatat 16583570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 322 - 403
Target Start/End: Original strand, 1966728 - 1966808
Alignment:
Q  322 gagcaatgataggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatattgtct 403  Q
    ||||||||||||||||||||||||| ||| | || |  |||||||||||||  |||||||||||||| ||||||||| ||||    
T  1966728 gagcaatgataggtagacacccttactgtatacacccttttgtaccactct-gaaaatttcagttaaccaaatatatggtct 1966808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 403
Target Start/End: Complemental strand, 17633545 - 17633471
Alignment:
Q  329 gataggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatattgtct 403  Q
    ||||||| || ||||||||| ||| || | |||||||||||| | ||||||||||||||| ||||||||| ||||    
T  17633545 gataggttgatacccttaatatgtacacccctttgtaccactttgaaaaatttcagttaaccaaatatatggtct 17633471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 325 - 398
Target Start/End: Complemental strand, 19596996 - 19596923
Alignment:
Q  325 caatgataggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatat 398  Q
    ||||||||||||||| |||||||||||| ||||  ||||||||  | |  |||||||||||||| |||||||||    
T  19596996 caatgataggtagacgcccttaatgtgtacatccttttgtacccttttggaaaatttcagttaaccaaatatat 19596923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 403
Target Start/End: Complemental strand, 25007701 - 25007632
Alignment:
Q  333 ggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatattgtct 403  Q
    ||||||||| |||||||| | || | |||||||||| |||| |||||||||||||| ||||||||| ||||    
T  25007701 ggtagacactcttaatgtatacacc-ctttgtaccattctcgaaaatttcagttaaccaaatatatggtct 25007632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 398
Target Start/End: Original strand, 9810665 - 9810734
Alignment:
Q  329 gataggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatat 398  Q
    ||||||| |||||||||||| ||| || |  ||||||||||| | |||||||||||||||  ||||||||    
T  9810665 gataggttgacacccttaatatgtacacccttttgtaccactatgaaaaatttcagttaattaaatatat 9810734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 323 - 403
Target Start/End: Original strand, 17633236 - 17633316
Alignment:
Q  323 agcaatgataggtagacacccttaatgtgtgcatctc-tttgtaccactctcaaaaatttcagttaaacaaatatattgtct 403  Q
    ||||| ||||||| |||||| ||||||||| || ||| ||||||||||||  |||||||| |||||| ||||||||| ||||    
T  17633236 agcaaggataggttgacacctttaatgtgtaca-ctcatttgtaccactccgaaaaattttagttaaccaaatatatggtct 17633316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 397
Target Start/End: Original strand, 14350997 - 14351037
Alignment:
Q  357 ctctttgtaccactctcaaaaatttcagttaaacaaatata 397  Q
    ||||||| ||||||||| |||||||||||||| ||||||||    
T  14350997 ctctttgcaccactctcgaaaatttcagttaaccaaatata 14351037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 403
Target Start/End: Complemental strand, 24669352 - 24669308
Alignment:
Q  359 ctttgtaccactctcaaaaatttcagttaaacaaatatattgtct 403  Q
    |||||||||||||| |||||||| |||||| ||||||||| ||||    
T  24669352 ctttgtaccactctgaaaaatttaagttaatcaaatatatggtct 24669308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 398
Target Start/End: Complemental strand, 42908782 - 42908707
Alignment:
Q  323 agcaatgataggtagacacccttaatgtgtgcatctc-tttgtaccactctcaaaaatttcagttaaacaaatatat 398  Q
    |||||||||||||  ||| | ||||| |||||| ||| ||||||||||||| |||||||| |||||| |||||||||    
T  42908782 agcaatgataggttaacatctttaatatgtgca-ctcatttgtaccactctgaaaaatttaagttaaccaaatatat 42908707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 1e-20; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 28 - 107
Target Start/End: Complemental strand, 5179391 - 5179312
Alignment:
Q  28 agaagctagaaatgggtgttgttcgaaaatgttacggtgagttagaaattggcagagggtccttccttggcaagagagat 107  Q
    ||||||| |||||| ||| ||| ||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||    
T  5179391 agaagctggaaatgagtgatgtccgaaaatgttatggtgagtcagaaattggcagagggtccttccttggcaggagagat 5179312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 344 - 407
Target Start/End: Original strand, 15233138 - 15233201
Alignment:
Q  344 ttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatattgtctctgc 407  Q
    ||||||||| |||||||| |||||| ||| ||||||||||||||| ||||||||| ||||||||    
T  15233138 ttaatgtgtacatctcttcgtaccaatctgaaaaatttcagttaatcaaatatatggtctctgc 15233201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 333 - 403
Target Start/End: Complemental strand, 24576260 - 24576190
Alignment:
Q  333 ggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatattgtct 403  Q
    ||||||||||| |||||||| || | ||||||||||||||| ||||||||| |||| ||||||||| ||||    
T  24576260 ggtagacacccgtaatgtgtacacccctttgtaccactctcgaaaatttcaattaaccaaatatatggtct 24576190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 333 - 398
Target Start/End: Complemental strand, 1251676 - 1251611
Alignment:
Q  333 ggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatat 398  Q
    |||||||| ||||||||||| || |  |||||||||||||| ||||||||||||||  ||||||||    
T  1251676 ggtagacatccttaatgtgtacacccatttgtaccactctcgaaaatttcagttaactaaatatat 1251611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 333 - 398
Target Start/End: Original strand, 31596704 - 31596769
Alignment:
Q  333 ggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatat 398  Q
    ||||||||| |||||| ||| || |||||||||||||| | ||||||| ||||||| |||||||||    
T  31596704 ggtagacactcttaatatgtacacctctttgtaccactttgaaaaattacagttaatcaaatatat 31596769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 325 - 398
Target Start/End: Original strand, 38606724 - 38606797
Alignment:
Q  325 caatgataggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatat 398  Q
    |||||||||||||||| ||||||| | |  | | |||||||||||||| |||||||||||||||  ||||||||    
T  38606724 caatgataggtagacatccttaatctttagacccctttgtaccactctgaaaaatttcagttaactaaatatat 38606797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 333 - 388
Target Start/End: Complemental strand, 38607028 - 38606973
Alignment:
Q  333 ggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaa 388  Q
    |||||||| ||||||||||| || | |||||||| |||||| ||||||||||||||    
T  38607028 ggtagacatccttaatgtgtacacccctttgtacaactctccaaaatttcagttaa 38606973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 333 - 403
Target Start/End: Complemental strand, 31273762 - 31273692
Alignment:
Q  333 ggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatattgtct 403  Q
    |||||| || ||||||||||  | || |||||||||||||| ||||||||| |||| ||||||||| ||||    
T  31273762 ggtagatactcttaatgtgtatacctttttgtaccactctcgaaaatttcaattaatcaaatatatggtct 31273692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 398
Target Start/End: Complemental strand, 5573992 - 5573920
Alignment:
Q  326 aatgataggtagacacccttaatgtgtgcatctcttt-gtaccactctcaaaaatttcagttaaacaaatatat 398  Q
    |||||||||||||| || ||||||||| || |||||| |||||||||| ||| |||||||||||  ||||||||    
T  5573992 aatgataggtagactcctttaatgtgtaca-ctcttttgtaccactctaaaagatttcagttaactaaatatat 5573920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 403
Target Start/End: Complemental strand, 5322136 - 5322092
Alignment:
Q  359 ctttgtaccactctcaaaaatttcagttaaacaaatatattgtct 403  Q
    ||||||| ||||||||||||||||| |||| ||||||||| ||||    
T  5322136 ctttgtatcactctcaaaaatttcaattaaccaaatatatggtct 5322092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 340 - 398
Target Start/End: Complemental strand, 29677267 - 29677209
Alignment:
Q  340 acccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatat 398  Q
    ||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||    
T  29677267 acccttaatgtgtacacctctttgtaccactctcaaaaatttaagttaaacaaatatat 29677209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 325 - 386
Target Start/End: Original strand, 34941701 - 34941762
Alignment:
Q  325 caatgataggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagtt 386  Q
    |||||||||| ||||| ||||||||||| |||| |||||||||||||| |||||||||||||    
T  34941701 caatgataggaagacatccttaatgtgtacatccctttgtaccactctgaaaaatttcagtt 34941762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 330 - 398
Target Start/End: Original strand, 13350889 - 13350957
Alignment:
Q  330 ataggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatat 398  Q
    ||||||||||| ||||||||||| || |  |||||||||||||| |||||||||||||| |||||||||    
T  13350889 ataggtagacatccttaatgtgtacacccttttgtaccactctcgaaaatttcagttaaccaaatatat 13350957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 327 - 403
Target Start/End: Complemental strand, 34490399 - 34490323
Alignment:
Q  327 atgataggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatattgtct 403  Q
    ||||||||||||||| |||||||||| || | |||||||||||||| ||||||||||||| |  |||||||| ||||    
T  34490399 atgataggtagacactcttaatgtgtacaccactttgtaccactctgaaaaatttcagtttacaaaatatatggtct 34490323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 322 - 403
Target Start/End: Complemental strand, 13351101 - 13351020
Alignment:
Q  322 gagcaatgataggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatattgtct 403  Q
    |||||||||||| |||||| | ||||||||| || | |||||||||||||| |||||||| | |||| ||||||||| ||||    
T  13351101 gagcaatgatagctagacatctttaatgtgtacacccctttgtaccactctgaaaaatttaacttaaccaaatatatggtct 13351020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 322 - 398
Target Start/End: Original strand, 29676979 - 29677055
Alignment:
Q  322 gagcaatgataggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatat 398  Q
    |||||||||||| |||||||| ||||||||| | || ||||||| |||| | |||||||| |||||| |||||||||    
T  29676979 gagcaatgatagttagacacctttaatgtgtacgtccctttgtagcactttgaaaaattttagttaaccaaatatat 29677055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 322 - 398
Target Start/End: Complemental strand, 5855320 - 5855244
Alignment:
Q  322 gagcaatgataggtagacacccttaatgtgtgcatctcttt-gtaccactctcaaaaatttcagttaaacaaatatat 398  Q
    |||||||||||||||||||||  |||| ||| || |||||| |||||||||| |||||||| |||||| |||||||||    
T  5855320 gagcaatgataggtagacaccactaatatgtaca-ctcttttgtaccactctgaaaaatttaagttaaccaaatatat 5855244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 326 - 403
Target Start/End: Original strand, 34490091 - 34490168
Alignment:
Q  326 aatgataggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatattgtct 403  Q
    |||||| ||||||||||||||||||||  |||| || |||||||| |  ||||||||||||||  |||||||| ||||    
T  34490091 aatgattggtagacacccttaatgtgtatatcttttggtaccactatgtaaaatttcagttaactaaatatatggtct 34490168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 403
Target Start/End: Original strand, 5855012 - 5855085
Alignment:
Q  329 gataggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatattgtct 403  Q
    ||||||||||||| |||||||| | |||| |||||||| ||| | ||||||||||| ||| ||||||||| ||||    
T  5855012 gataggtagacacgcttaatgtttacatccctttgtactact-tgaaaaatttcagctaaccaaatatatggtct 5855085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 388
Target Start/End: Complemental strand, 38952119 - 38952057
Alignment:
Q  326 aatgataggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaa 388  Q
    |||||||| |||||| |||||| || | || ||||||||| |||||| |||||||||||||||    
T  38952119 aatgatagatagacaaccttaaagtatacacctctttgtatcactctgaaaaatttcagttaa 38952057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 398
Target Start/End: Complemental strand, 25238653 - 25238616
Alignment:
Q  361 ttgtaccactctcaaaaatttcagttaaacaaatatat 398  Q
    |||||||||||| ||||||||||||||| |||||||||    
T  25238653 ttgtaccactctgaaaaatttcagttaatcaaatatat 25238616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 335 - 398
Target Start/End: Complemental strand, 517613 - 517547
Alignment:
Q  335 tagacacccttaatgtgtgcatc---tctttgtaccactctcaaaaatttcagttaaacaaatatat 398  Q
    |||||| ||||||||||| ||||   | |||||| ||||||||||||||| |||||| |||||||||    
T  517613 tagacatccttaatgtgtacatcatttatttgtatcactctcaaaaatttaagttaaccaaatatat 517547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 325 - 398
Target Start/End: Original strand, 36169302 - 36169375
Alignment:
Q  325 caatgataggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatat 398  Q
    ||||||||||||||||| |||||||||| | ||||||||||||||| | |||||||| |||||| |||||||||    
T  36169302 caatgataggtagacactcttaatgtgtacttctctttgtaccactttgaaaaattttagttaaccaaatatat 36169375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 326 - 403
Target Start/End: Original strand, 33958878 - 33958954
Alignment:
Q  326 aatgataggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatattgtct 403  Q
    ||||||||||||||||||||||| |||  ||| |||||||||||||| |||||||||| |||| ||||||||| ||||    
T  33958878 aatgataggtagacacccttaatatgtatatc-ctttgtaccactctgaaaaatttcacttaaccaaatatatggtct 33958954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 333 - 398
Target Start/End: Original strand, 35922617 - 35922682
Alignment:
Q  333 ggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatat 398  Q
    ||||||||| |||||||||| |||| ||||||| |||||| ||||||||||||||| |||||||||    
T  35922617 ggtagacacacttaatgtgtacatccctttgtatcactctgaaaaatttcagttaatcaaatatat 35922682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 327 - 398
Target Start/End: Complemental strand, 42034967 - 42034896
Alignment:
Q  327 atgataggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatat 398  Q
    |||||||||||||| | |||||| || |||| |||||||||||||| ||||||||||||| | |||||||||    
T  42034967 atgataggtagacatctttaatgcgtacatccctttgtaccactctaaaaaatttcagttgatcaaatatat 42034896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 329 - 403
Target Start/End: Complemental strand, 43262904 - 43262830
Alignment:
Q  329 gataggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatattgtct 403  Q
    |||| ||||||||||||||||||| || | |||||||| ||| | ||||||||||||||| ||||||||| ||||    
T  43262904 gataagtagacacccttaatgtgtacacccctttgtactactttgaaaaatttcagttaaccaaatatatggtct 43262830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 403
Target Start/End: Complemental strand, 43461904 - 43461830
Alignment:
Q  329 gataggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatattgtct 403  Q
    ||||||||||||| ||||||||||| | | ||||||| |||| |  |||||||||||||| ||||||||| ||||    
T  43461904 gataggtagacactcttaatgtgtgtacccctttgtagcacttttgaaaatttcagttaatcaaatatatggtct 43461830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 330 - 398
Target Start/End: Original strand, 16095519 - 16095587
Alignment:
Q  330 ataggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatat 398  Q
    ||||||||||||  ||||||||| || | |||| |||||||||| ||||||||| |||| |||||||||    
T  16095519 ataggtagacacatttaatgtgtacacccctttctaccactctcgaaaatttcaattaaccaaatatat 16095587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 344 - 398
Target Start/End: Original strand, 7156000 - 7156054
Alignment:
Q  344 ttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatat 398  Q
    ||||||||| ||||| ||||||||||| |  |||||||||||||| |||||||||    
T  7156000 ttaatgtgtacatctttttgtaccactttagaaaatttcagttaatcaaatatat 7156054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 403
Target Start/End: Complemental strand, 15221777 - 15221699
Alignment:
Q  325 caatgataggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatattgtct 403  Q
    |||||||||| ||||||| ||||||||| ||   ||||||| || ||| |||||||||||||||  |||||||| ||||    
T  15221777 caatgataggcagacacctttaatgtgtacactcctttgtatcattctgaaaaatttcagttaactaaatatatggtct 15221699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 398
Target Start/End: Original strand, 31189512 - 31189550
Alignment:
Q  360 tttgtaccactctcaaaaatttcagttaaacaaatatat 398  Q
    |||||||||||||| |||||||||||||| |||||||||    
T  31189512 tttgtaccactctcgaaaatttcagttaaccaaatatat 31189550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 372
Target Start/End: Original strand, 43262621 - 43262671
Alignment:
Q  322 gagcaatgataggtagacacccttaatgtgtgcatctctttgtaccactct 372  Q
    ||||||||||||||||||| || |||||||| || |||||||||| |||||    
T  43262621 gagcaatgataggtagacatccctaatgtgtacacctctttgtactactct 43262671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 360 - 404
Target Start/End: Original strand, 30704321 - 30704365
Alignment:
Q  360 tttgtaccactctcaaaaatttcagttaaacaaatatattgtctc 404  Q
    |||||||||||||  |||||||||||||| ||||||||| |||||    
T  30704321 tttgtaccactctgtaaaatttcagttaatcaaatatatggtctc 30704365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 321 - 398
Target Start/End: Original strand, 1400666 - 1400743
Alignment:
Q  321 ggagcaatgataggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatat 398  Q
    |||||||| ||||||||||||||||||||||| || |  ||||||||| ||| ||||||||||||||| |||||||||    
T  1400666 ggagcaataataggtagacacccttaatgtgtacacccttttgtaccaatctgaaaaatttcagttaaccaaatatat 1400743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 322 - 403
Target Start/End: Original strand, 28527217 - 28527297
Alignment:
Q  322 gagcaatgataggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatattgtct 403  Q
    ||||||||||||||||||||||||||| ||| || | |||||||||||| | ||||||||||| ||| ||||||||| ||||    
T  28527217 gagcaatgataggtagacacccttaat-tgtacacccctttgtaccactttgaaaaatttcagctaaccaaatatatggtct 28527297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 323 - 403
Target Start/End: Original strand, 30905945 - 30906025
Alignment:
Q  323 agcaatgataggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatattgtct 403  Q
    ||||||||||||||||||| |||||||||| |||| ||||||| || ||| |||| ||| |||||| || |||||||||||    
T  30905945 agcaatgataggtagacactcttaatgtgtacatccctttgtaacattctgaaaatttttagttaaccagatatattgtct 30906025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 323 - 398
Target Start/End: Complemental strand, 34175323 - 34175248
Alignment:
Q  323 agcaatgataggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatat 398  Q
    ||||||||||||| |||||| ||||||||| || |  ||||||||| ||| |||||||| |||||| |||||||||    
T  34175323 agcaatgataggttgacaccattaatgtgtacacccatttgtaccattctaaaaaatttaagttaatcaaatatat 34175248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 333 - 403
Target Start/End: Complemental strand, 30906251 - 30906181
Alignment:
Q  333 ggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatattgtct 403  Q
    |||| ||||| ||||||||| || |  ||||||||||||| ||||||||||||||| ||||||||| ||||    
T  30906251 ggtacacacctttaatgtgtacacccttttgtaccactctgaaaaatttcagttaaccaaatatatggtct 30906181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 403
Target Start/End: Original strand, 45305881 - 45305946
Alignment:
Q  338 acacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatattgtct 403  Q
    ||||||||||| ||| ||   |||||||||||||| ||||||||||||||| ||||||||| ||||    
T  45305881 acacccttaatatgtacactcctttgtaccactctaaaaaatttcagttaatcaaatatatagtct 45305946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 337 - 403
Target Start/End: Complemental strand, 41212507 - 41212441
Alignment:
Q  337 gacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatattgtct 403  Q
    |||||||||||| |||  | | |||||||||||||| |||||||| |||||| ||||||||| ||||    
T  41212507 gacacccttaatatgtatacccctttgtaccactctgaaaaatttaagttaaccaaatatatggtct 41212441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 322 - 397
Target Start/End: Complemental strand, 2835178 - 2835103
Alignment:
Q  322 gagcaatgataggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatata 397  Q
    ||||||||||||||||||| |||||||||||  |||  ||||||||||||| |||||||| |||||| ||||||||    
T  2835178 gagcaatgataggtagacagccttaatgtgtatatcaatttgtaccactctgaaaaatttaagttaaccaaatata 2835103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 333 - 403
Target Start/End: Original strand, 22608270 - 22608340
Alignment:
Q  333 ggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatattgtct 403  Q
    |||||| | ||||||||||| || | ||||||||||||||||||||||| |||||| ||||||||| ||||    
T  22608270 ggtagatatccttaatgtgtacacccctttgtaccactctcaaaaattttagttaaccaaatatatggtct 22608340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 329 - 403
Target Start/End: Complemental strand, 24386420 - 24386346
Alignment:
Q  329 gataggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatattgtct 403  Q
    ||||||| |||||||||||||||| |||| |||| |||||| || |||||||| |||||| ||||||||| ||||    
T  24386420 gataggttgacacccttaatgtgtacatccctttataccacgctgaaaaatttaagttaaccaaatatatggtct 24386346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 322 - 403
Target Start/End: Original strand, 30056019 - 30056100
Alignment:
Q  322 gagcaatgataggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatattgtct 403  Q
    ||||||| ||||||||||||| ||||||| | |  | |||||||| ||||| ||||||||||||||| ||||||||| ||||    
T  30056019 gagcaataataggtagacacctttaatgtatactcccctttgtacaactctaaaaaatttcagttaaccaaatatatggtct 30056100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 329 - 398
Target Start/End: Original strand, 2430507 - 2430577
Alignment:
Q  329 gataggtagacacccttaatgtgtgcatctctttgtaccactct-caaaaatttcagttaaacaaatatat 398  Q
    |||||||||||||||||||||||| |||  |||||||||| |||  |||||||||||||||  ||||||||    
T  2430507 gataggtagacacccttaatgtgtacattcctttgtaccattctgaaaaaatttcagttaactaaatatat 2430577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 329 - 398
Target Start/End: Original strand, 20084581 - 20084650
Alignment:
Q  329 gataggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatat 398  Q
    ||||||| |||||||||||||||| |||| |||| |||||  || |||||||| |||||| |||||||||    
T  20084581 gataggttgacacccttaatgtgtacatccctttataccatgctgaaaaatttaagttaaccaaatatat 20084650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 359 - 403
Target Start/End: Original strand, 10304631 - 10304675
Alignment:
Q  359 ctttgtaccactctcaaaaatttcagttaaacaaatatattgtct 403  Q
    |||||||||||||| ||||||||||||||| ||||||||| ||||    
T  10304631 ctttgtaccactctaaaaaatttcagttaaccaaatatatggtct 10304675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 403
Target Start/End: Original strand, 138612 - 138689
Alignment:
Q  325 caatgataggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatattgtct 403  Q
    |||||||||||||| ||||||||| ||  ||| ||||| ||||||||| ||||| || |||||| ||||||||| ||||    
T  138612 caatgataggtagatacccttaatatgcacat-tctttataccactctaaaaaaatttagttaaccaaatatatggtct 138689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 325 - 403
Target Start/End: Original strand, 146633 - 146710
Alignment:
Q  325 caatgataggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatattgtct 403  Q
    |||||||||||||| ||||||||| ||  ||| ||||| ||||||||| ||||| || |||||| ||||||||| ||||    
T  146633 caatgataggtagatacccttaatatgcacat-tctttataccactctaaaaaaatttagttaaccaaatatatggtct 146710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 326 - 387
Target Start/End: Original strand, 9474536 - 9474598
Alignment:
Q  326 aatgataggtagacacccttaatgtgtgcatctctttgtaccactc-tcaaaaatttcagtta 387  Q
    |||||||||||||||| |||||||| | ||||  |||||||||||| | ||||||||||||||    
T  9474536 aatgataggtagacactcttaatgtatacatccttttgtaccactcttgaaaaatttcagtta 9474598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 398
Target Start/End: Complemental strand, 9068624 - 9068545
Alignment:
Q  322 gagcaatgataggtagacaccctta---atgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatat 398  Q
    |||||||||| |||||||| |||||   |||||| || |  ||||||||||||| |||||||| |||||| |||||||||    
T  9068624 gagcaatgatcggtagacatccttattaatgtgtacacccttttgtaccactctgaaaaattttagttaatcaaatatat 9068545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 403
Target Start/End: Original strand, 11108067 - 11108144
Alignment:
Q  326 aatgataggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatattgtct 403  Q
    |||| ||||||||||| |||||||||| |||    |||||| ||||| |||||||||| |||| ||||||||| ||||    
T  11108067 aatggtaggtagacactcttaatgtgtacattcacttgtactactctgaaaaatttcaattaaccaaatatatggtct 11108144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 398
Target Start/End: Original strand, 3620653 - 3620729
Alignment:
Q  322 gagcaatgataggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatat 398  Q
    ||||| |||||||||||||  |||||||||| ||||  ||| ||||||||| ||   ||| ||||||||||||||||    
T  3620653 gagcagtgataggtagacattcttaatgtgtacatccatttataccactctgaatttttttagttaaacaaatatat 3620729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 328 - 403
Target Start/End: Complemental strand, 7915803 - 7915728
Alignment:
Q  328 tgataggtagacacccttaatgtgtgcatc-tctttgtaccactctcaaaaatttcagttaaacaaatatattgtct 403  Q
    |||||| ||||||  |||||||||| || | ||||| ||||||||| ||||||||||||||| ||||||||| ||||    
T  7915803 tgatagatagacattcttaatgtgtacaccctcttt-taccactctgaaaaatttcagttaatcaaatatatcgtct 7915728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 403
Target Start/End: Complemental strand, 18980491 - 18980411
Alignment:
Q  323 agcaatgataggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatattgtct 403  Q
    ||||||||||||| ||||| |||||||||  || || |||||||||||||  ||||| | ||||||  |||||||| ||||    
T  18980491 agcaatgataggttgacactcttaatgtgcacacctttttgtaccactctgcaaaatctaagttaactaaatatatggtct 18980411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1126 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: scaffold1126
Description:

Target: scaffold1126; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 333 - 403
Target Start/End: Complemental strand, 409 - 339
Alignment:
Q  333 ggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatattgtct 403  Q
    |||| ||||||||||| ||| ||||||||||||||||||| |||| |||||||||| ||||||||| ||||    
T  409 ggtaaacacccttaatttgtacatctctttgtaccactctgaaaattttcagttaaccaaatatatggtct 339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1126; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 325 - 398
Target Start/End: Original strand, 104 - 178
Alignment:
Q  325 caatgataggtagacacccttaatgtgtgcatctctttgtaccactc-tcaaaaatttcagttaaacaaatatat 398  Q
    |||||| ||||||||| | ||||||||| ||| | |||||||||||| | ||||||||||||||| |||||||||    
T  104 caatgacaggtagacatctttaatgtgtacatttttttgtaccactcttgaaaaatttcagttaaccaaatatat 178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 334 - 403
Target Start/End: Original strand, 3823561 - 3823630
Alignment:
Q  334 gtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatattgtct 403  Q
    ||||||||||||||||||| || | ||||||||||||||| |||||||||||||| ||| ||||| ||||    
T  3823561 gtagacacccttaatgtgtacacccctttgtaccactctcgaaaatttcagttaaccaattatatggtct 3823630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 322 - 403
Target Start/End: Complemental strand, 3823867 - 3823786
Alignment:
Q  322 gagcaatgataggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatattgtct 403  Q
    ||||||||||||||||||||||||||| ||| || |  ||||||| ||||  ||||||| ||||||| ||||||||||||||    
T  3823867 gagcaatgataggtagacacccttaatatgttcacccgtttgtactactcagaaaaattccagttaaccaaatatattgtct 3823786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 326 - 403
Target Start/End: Complemental strand, 19280409 - 19280332
Alignment:
Q  326 aatgataggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatattgtct 403  Q
    ||||||||||||||||||||||||||| || |  ||||||||||||| |||| ||| |||||| ||||||||| ||||    
T  19280409 aatgataggtagacacccttaatgtgtacacccgtttgtaccactctgaaaatttttagttaatcaaatatatggtct 19280332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 322 - 398
Target Start/End: Complemental strand, 11510151 - 11510076
Alignment:
Q  322 gagcaatgataggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatat 398  Q
    ||||||||||||||||||| |||||||||||  ||| ||||||||  |||| |||||||||||||||| ||||||||    
T  11510151 gagcaatgataggtagacatccttaatgtgtatatc-ctttgtacacctctgaaaaatttcagttaaataaatatat 11510076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 333 - 388
Target Start/End: Original strand, 3785871 - 3785926
Alignment:
Q  333 ggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaa 388  Q
    |||||||||||||||||||| || | ||||||||||||||| ||||||||||||||    
T  3785871 ggtagacacccttaatgtgtacacccctttgtaccactctcgaaaatttcagttaa 3785926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 333 - 398
Target Start/End: Complemental strand, 9710918 - 9710853
Alignment:
Q  333 ggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatat 398  Q
    |||||| ||||||||| ||| || | |||||||||||||| ||||||||||||||| |||||||||    
T  9710918 ggtagaaacccttaatatgtacacccctttgtaccactctgaaaaatttcagttaaccaaatatat 9710853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 342 - 398
Target Start/End: Original strand, 44080174 - 44080230
Alignment:
Q  342 ccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatat 398  Q
    ||||||||||| ||| ||||||||||||||| || |||||||||||| |||||||||    
T  44080174 ccttaatgtgtacatatctttgtaccactctgaacaatttcagttaaccaaatatat 44080230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 324 - 403
Target Start/End: Complemental strand, 5342090 - 5342011
Alignment:
Q  324 gcaatgataggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatattgtct 403  Q
    ||||||||||||||||| || ||||| || || | |||||||| ||||| ||||||||||||||| | ||||||| ||||    
T  5342090 gcaatgataggtagacatccctaatgcgtacacccctttgtacgactctgaaaaatttcagttaatcgaatatatggtct 5342011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 333 - 396
Target Start/End: Original strand, 31545435 - 31545498
Alignment:
Q  333 ggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatat 396  Q
    |||||||||| |||||||||  ||| |||||||| |||||| |||||||||||||| |||||||    
T  31545435 ggtagacacctttaatgtgtatatccctttgtactactctcgaaaatttcagttaatcaaatat 31545498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 325 - 399
Target Start/End: Original strand, 42637855 - 42637927
Alignment:
Q  325 caatgataggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatatt 399  Q
    |||| ||||||||||||||||||||||  |||| ||||||||||  || |||||||||| |||| ||||||||||    
T  42637855 caataataggtagacacccttaatgtgcacatccctttgtacca--ctgaaaaatttcaattaaccaaatatatt 42637927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 322 - 403
Target Start/End: Complemental strand, 3786175 - 3786096
Alignment:
Q  322 gagcaatgataggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatattgtct 403  Q
    ||||||||||||||||||||||||||| ||| || |  ||  ||||||||  ||||||| ||||||| ||||||||||||||    
T  3786175 gagcaatgataggtagacacccttaatatgttcacccgtt--taccactcagaaaaattccagttaaccaaatatattgtct 3786096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 335 - 396
Target Start/End: Original strand, 11509814 - 11509875
Alignment:
Q  335 tagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatat 396  Q
    ||||||| |||||||||| || | |||||||||||||| ||||||||||  ||| |||||||    
T  11509814 tagacacacttaatgtgtacacccctttgtaccactcttaaaaatttcaaataaccaaatat 11509875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 403
Target Start/End: Complemental strand, 10819 - 10745
Alignment:
Q  329 gataggtagacacccttaatgtgtgcatctctttgtaccactctcaaaaatttcagttaaacaaatatattgtct 403  Q
    |||||||| ||| ||||||| ||| |||  ||||||||||||||  ||||||||| |||| ||||||||| ||||    
T  10819 gataggtaaacatccttaatatgtacattcctttgtaccactctagaaaatttcaattaaccaaatatatggtct 10745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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