View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8899_low_5 (Length: 845)
Name: NF8899_low_5
Description: NF8899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8899_low_5 |
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| [»] scaffold0147 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 705; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 705; E-Value: 0
Query Start/End: Original strand, 19 - 743
Target Start/End: Complemental strand, 1569419 - 1568695
Alignment:
| Q |
19 |
taaaggttgccctacatcctattaggctcaacagataccataggagatgctcttagtgaaacctatataaatttaaatcaatagaaaaagaacgggtgtg |
118 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1569419 |
taaaggttgccctacatcctattaggctcaacacataccataggagatgctcttagtgaaacctatataaatttaaatcaatagaaaaagaacgggtgtg |
1569320 |
T |
|
| Q |
119 |
ttagaagatgtatttttaatacaccttttaatacgtagaatatatagagttaccttcattttaactaggtacaattcaggggcaattatcttcctttgat |
218 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1569319 |
ttagaagatgtatttttaatacacctcttaatacgtagaatatatagagttaccttcattttaactaggtacaattcaggggcaattatcttcctttgat |
1569220 |
T |
|
| Q |
219 |
gagcccaaaagagtccacttgatgataatataccttttcctaggagtggcctattatcttcctttgctagcgattgaagtggagtaggtcataagtgaaa |
318 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1569219 |
gagccgaaaagagtccacttgatgataatataccttttcctaggagtggcctattatcttcctttgctagcgattgaagtggagtaggtcataagtgaaa |
1569120 |
T |
|
| Q |
319 |
ctgaaaccataatgcaatatgacatactattgactacatatatatattgccaatatgtgctagttcatgtatttgcaaaagttatatccgctagaagatg |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1569119 |
ctgaaaccataatgcaatatgacatactattgactacatatatatattgccaatatgtgctagttcatgtatttgcaaaagttatatccgctagaagatg |
1569020 |
T |
|
| Q |
419 |
aaggacatagtaatttaatctggtaggtgatttactatgaagtactgtgacacgtttctttccgttgttctttcttttgttactgaaaaagaccagcaag |
518 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1569019 |
aaggacatagtaatttaatctggtaggtgatttactatgaagtactgtggcacgtttctttccgttgttctttcttttgttactgaaaaagaccagcaag |
1568920 |
T |
|
| Q |
519 |
taaattttgtttattagtatttcatgtttactataatatatatatctctgatatcacctggttgtgtgttctccgtttagatgacttaaggttgatgtta |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1568919 |
taaattttgtttattagtatttcatgtttactataatatatatatctctgatatcacctggttgtgtgttctccgtttagatgacttaaggttgatgtta |
1568820 |
T |
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| Q |
619 |
aattaggacaagagactatatgacatgcttttaaggtgatctctaggagttagttgcgtttttcctttggctttcactctcattttgtttggacaatata |
718 |
Q |
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| T |
1568819 |
aattaggacaagagactatatgacatgctttgaaggtgatctctaggagttagttgcgtttttcctttggctttcactctcattttgtttggacaatata |
1568720 |
T |
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| Q |
719 |
atgtgcatacttttttatgtgattc |
743 |
Q |
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||||||||||||||||||||||||| |
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| T |
1568719 |
atgtgcatacttttttatgtgattc |
1568695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 361 - 543
Target Start/End: Complemental strand, 1562024 - 1561837
Alignment:
| Q |
361 |
tatattgccaatatgtgctagttcatgtatttgcaaaagttatatccgctagaagatgaaggacatagtaatttaatctggtaggtgatttactatgaag |
460 |
Q |
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|||||||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
1562024 |
tatattgccaatatgtgctactttgtgtatttgcaaaagttatatcccctagaagatgaaggacatagtaatttaatctggtaggtcatttcctatgaa- |
1561926 |
T |
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| Q |
461 |
tactgtgacacgtttctttccgttgtt----------ctttcttttgttactgaaaaagaccagcaagtaaattttgtttattagtatttcat |
543 |
Q |
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| T |
1561925 |
----gtggcacgtttctttcggttgttctagagacgactttcttttgttcctgaaaaagaccagcaagtaaattttgtttattagtatttcat |
1561837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 101; E-Value: 1e-49
Query Start/End: Original strand, 150 - 278
Target Start/End: Complemental strand, 1761616 - 1761488
Alignment:
| Q |
150 |
tacgtagaatatatagagttaccttcattttaactaggtacaattcaggggcaattatcttcctttgatgagcccaaaagagtccacttgatgataatat |
249 |
Q |
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||||||||| ||||| | |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1761616 |
tacgtagaagatataaacttaccttcattttatctaggtacaattcaggggcaataatcttcctttgatgagcccaaaaaagtccacttgatgataatat |
1761517 |
T |
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| Q |
250 |
accttttcctaggagtggcctattatctt |
278 |
Q |
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| T |
1761516 |
accttttccaaggagtggcctattatctt |
1761488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 361 - 543
Target Start/End: Complemental strand, 2092479 - 2092292
Alignment:
| Q |
361 |
tatattgccaatatgtgctagttcatgtatttgcaaaagttatatccgctagaagatgaaggacatagtaatttaatctggtaggtgatttactatgaag |
460 |
Q |
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|||||||||||||||||||| || ||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2092479 |
tatattgccaatatgtgctactttttgtatttacaaaagttatatcccttagaagatgaaggacatagtaatttaatctggttggtgatttactatgaa- |
2092381 |
T |
|
| Q |
461 |
tactgtgacacgtttctttccgttgtt----------ctttcttttgttactgaaaaagaccagcaagtaaattttgtttattagtatttcat |
543 |
Q |
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||||| |||||||| ||||| |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2092380 |
----gtgacgtctttctttcatttgttctagagaagactttcttttgtttctgaaaaagaccaccaagtaaattttgtttattagtatttcat |
2092292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 302 - 356
Target Start/End: Complemental strand, 1562167 - 1562112
Alignment:
| Q |
302 |
gtaggtcataagtgaaactgaaaccataa-tgcaatatgacatactattgactaca |
356 |
Q |
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| T |
1562167 |
gtaggtcataagtgaaactgaaaccataactgcaatatgacatactattgactaca |
1562112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 295 - 356
Target Start/End: Complemental strand, 2092634 - 2092571
Alignment:
| Q |
295 |
aagtggagtaggtcataagtgaaactgaaaccataa-tgcaatatgacatacta-ttgactaca |
356 |
Q |
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|||| ||||||||||| |||||||| ||||||||| ||||||||||||||||| ||||||||| |
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| T |
2092634 |
aagtagagtaggtcatcagtgaaacctaaaccataactgcaatatgacatactagttgactaca |
2092571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 558 - 591
Target Start/End: Complemental strand, 1561028 - 1560995
Alignment:
| Q |
558 |
atatatctctgatatcacctggttgtgtgttctc |
591 |
Q |
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||||||||||||||||| |||||||||||||||| |
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| T |
1561028 |
atatatctctgatatcagctggttgtgtgttctc |
1560995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 183 - 267
Target Start/End: Complemental strand, 19206592 - 19206508
Alignment:
| Q |
183 |
ctaggtacaattcaggggcaattatcttcctttgatgagcccaaaagagtccacttgatgataatataccttttcctaggagtgg |
267 |
Q |
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|||||||||||||||| || ||||||||||| ||||||| ||||| || ||||||||||||| |||||||| || |||||||| |
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| T |
19206592 |
ctaggtacaattcaggcgcgattatcttcctctgatgagaccaaatcagaccacttgatgatactataccttggccaaggagtgg |
19206508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0147 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 267
Target Start/End: Complemental strand, 9092 - 9008
Alignment:
| Q |
183 |
ctaggtacaattcaggggcaattatcttcctttgatgagcccaaaagagtccacttgatgataatataccttttcctaggagtgg |
267 |
Q |
| |
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|||||||||| ||||| ||||||||||| || ||||| ||||||| | ||||||||||||| |||||||| || |||||||| |
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|
| T |
9092 |
ctaggtacaactcaggcgcaattatctttctctgatgtgcccaaatcggaccacttgatgatattataccttggccaaggagtgg |
9008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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