View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8899_low_52 (Length: 384)
Name: NF8899_low_52
Description: NF8899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8899_low_52 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0044 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 12 - 384
Target Start/End: Complemental strand, 44530929 - 44530557
Alignment:
| Q |
12 |
cagagaccaatcattgagactgcgaagcattaatacagaatctatatcagcaacctaaaaaggacaaaatcatcaattttggccacagagcctggttgaa |
111 |
Q |
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| T |
44530929 |
cagagaccaatcattgagactgcgaagcattaatacagaatctatatcagcaacctaaacaggacaaaatcatcaattttggccacagagcctggttgaa |
44530830 |
T |
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| Q |
112 |
ataattacccaataaaacaaatcataatttaatttgcaaaacattcaccagtagaaggatgagagaacgtaaaagtttagaattcaacaaacattagtgt |
211 |
Q |
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| T |
44530829 |
ataattacccaataaaacaaatcataatttaatttgcaaaacattcaccagtagaaggatgagagaacgtaaaagtttagaattcaacaaacattagtgt |
44530730 |
T |
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| Q |
212 |
aaagttaagctcacttttaacttcagaatagtgagtggaatccacatgaaatagttcgatctacatgaaatttaccccaattgtctagaaaagagtatgt |
311 |
Q |
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| T |
44530729 |
aaagttaagctcacttttaacttcagaatagtgagtggaatccacatgaaatagttcgatctacatgaaatttaccccaattgtctagaaaagagtatgt |
44530630 |
T |
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| Q |
312 |
gctgcttctcaacgataacaaggacataaaaggcaattttacacaattctaaaaggccccaatcaaattgctt |
384 |
Q |
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| T |
44530629 |
gttgcttctcaacgataacaaggacataaaaggcaattttacacaattctaaaaggccccaatcaaattgctt |
44530557 |
T |
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Target: scaffold0044 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0044
Description:
Target: scaffold0044; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 190 - 251
Target Start/End: Original strand, 10446 - 10507
Alignment:
| Q |
190 |
agaattcaacaaacattagtgtaaagttaagctcacttttaacttcagaatagtgagtggaa |
251 |
Q |
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| T |
10446 |
agaattcatcaaacattagtgtaaagtttaattcaattttaacctcaaaatagtgagtggaa |
10507 |
T |
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