View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8899_low_53 (Length: 382)
Name: NF8899_low_53
Description: NF8899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8899_low_53 |
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Alignment Details
Target: chr4 (Bit Score: 145; Significance: 3e-76; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 197 - 362
Target Start/End: Complemental strand, 48954420 - 48954255
Alignment:
| Q |
197 |
aacctcacttttgtgtctgtgagcctgccttcacccctttattnnnnnnntataccaactatgtatgtatcataaagtaagaacaagatgaaaaggcata |
296 |
Q |
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| T |
48954420 |
aacctcacttttgtgtctgtgagcctgccttcacccctttattaaaaaaatataccaactatgtatgtatcataaagtaagaacaagatgaaaaggcata |
48954321 |
T |
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| Q |
297 |
aaatgtaagtaaaaagttaataaattttgttttcgacaattgatttgttgattgatcttggatgta |
362 |
Q |
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| T |
48954320 |
aaatgtaagtaaaaagttaataaattttgttttcgacaattgatttgttgattgatcttggatgta |
48954255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 64 - 145
Target Start/End: Complemental strand, 48954553 - 48954472
Alignment:
| Q |
64 |
atatatagaggaccgagctatgtaaaggaaggttttttcccttcaaaacgatactgacgtacgtggctttgtaataaaccag |
145 |
Q |
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| T |
48954553 |
atatatagaggacggagctatgtaaaggaaggttttttcccttcaaaacgatactgacgtacgtggctttgtaacaaaccag |
48954472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 260 - 362
Target Start/End: Original strand, 1116916 - 1117020
Alignment:
| Q |
260 |
tatgtatcataaagtaagaacaagatgaaaaggcat-aaaatgta-agtaaaaagttaataaattttgttttcgacaattgatttgttgattgatcttgg |
357 |
Q |
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| T |
1116916 |
tatgtatcataaagtaagaacaaaatgaaaaggcaagaaaatgcatagtaaaaagttaataaattttgtttccgacatttgctttgttgcttgatcttgg |
1117015 |
T |
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| Q |
358 |
atgta |
362 |
Q |
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| T |
1117016 |
atgta |
1117020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 111
Target Start/End: Original strand, 1116678 - 1116764
Alignment:
| Q |
26 |
tgtatgatttatacttttattttcaggtagggggaataatata--tagaggaccgagctatgtaaaggaaggttttttcccttcaaaa |
111 |
Q |
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| T |
1116678 |
tgtatgattaatacttttattttcaggta-gagtaataatatatgtagaggattgatctatgtaaaggatagctttttcccttcaaaa |
1116764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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