View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8899_low_55 (Length: 380)

Name: NF8899_low_55
Description: NF8899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8899_low_55
NF8899_low_55
[»] chr6 (14 HSPs)
chr6 (5-362)||(33056976-33057333)
chr6 (43-100)||(33387611-33387668)
chr6 (43-104)||(28870671-28870732)
chr6 (164-217)||(33304050-33304103)
chr6 (164-217)||(33387726-33387779)
chr6 (43-105)||(33262056-33262118)
chr6 (42-100)||(33271278-33271336)
chr6 (58-104)||(33398526-33398572)
chr6 (43-103)||(33303935-33303995)
chr6 (58-89)||(33409438-33409469)
chr6 (166-217)||(33644941-33644992)
chr6 (39-89)||(33285044-33285094)
chr6 (58-91)||(33645061-33645094)
chr6 (164-216)||(33409538-33409590)
[»] chr2 (1 HSPs)
chr2 (43-100)||(17441401-17441458)
[»] scaffold1408 (2 HSPs)
scaffold1408 (43-88)||(83-128)
scaffold1408 (162-206)||(202-246)
[»] scaffold0428 (2 HSPs)
scaffold0428 (43-88)||(5829-5874)
scaffold0428 (162-206)||(5948-5992)
[»] chr4 (2 HSPs)
chr4 (6-35)||(31473181-31473210)
chr4 (43-107)||(31485286-31485350)


Alignment Details
Target: chr6 (Bit Score: 302; Significance: 1e-170; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 5 - 362
Target Start/End: Original strand, 33056976 - 33057333
Alignment:
Q  5 actttcgagttaaggaatttttgtgattcatgaataaattgaattcttgtatatcttgtttacatacccaacgatacccgcaactctcgacctccaaacc 104  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  33056976 actttggagttaaggaatttttgtgattcatgattaaattgaattcttgtatatcttgtttacatacccaacgataaccgcaactctcgacctccaaacc 33057075  T
Q  105 ttccacctcaaaaaatttaaattctatttttccaaattcatgacaggaatacccgaggtactctcggggtaagtagataatccataggtgacttgatttg 204  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  33057076 ttccacctcaaaaaattttaattctatttttccaaattcatgacaggaatacccggggtactctcggggtaagtagataatccataggtgacttgatttg 33057175  T
Q  205 gtggtaacaagactgagatttactggaactctcatattcaacaacctctcattggaatcaatacgcttgaaagccagatacatcaacttcgacgaacaaa 304  Q
    || |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||| |||    
T  33057176 gtcgtaacaagactgagctttactggaactctcattttcaacaacctctcattggaatcaatacgcttgaaagccagattcatcaactccgaggaataaa 33057275  T
Q  305 aactttcacgatagggtgccgtcgtaaatgctgcacaacatacaataccaatgatatt 362  Q
    || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  33057276 aaatttcacgatagggtgccatcgtaaatgctgcacaacatacaataccaatgatatt 33057333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 43 - 100
Target Start/End: Original strand, 33387611 - 33387668
Alignment:
Q  43 ttgaattcttgtatatcttgtttacatacccaacgatacccgcaactctcgacctcca 100  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||||  |||||||    
T  33387611 ttgaattcttgtaggtcttgtttacatacccaacgatacccgcaactcttcacctcca 33387668  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 104
Target Start/End: Complemental strand, 28870732 - 28870671
Alignment:
Q  43 ttgaattcttgtatatcttgtttacatacccaacgatacccgcaactctcgacctccaaacc 104  Q
    ||||| |||||||  ||||||||||||||||||||||||||||||||||  ||||| |||||    
T  28870732 ttgaactcttgtaggtcttgtttacatacccaacgatacccgcaactcttcacctcaaaacc 28870671  T

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Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 33304050 - 33304103
Alignment:
Q  164 actctcggggtaagtagataatccataggtgacttgatttggtggtaacaagac 217  Q
    |||||||||| |||||||| |||||||||||||||||||||||  |||||||||    
T  33304050 actctcgggggaagtagattatccataggtgacttgatttggtcataacaagac 33304103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 33387726 - 33387779
Alignment:
Q  164 actctcggggtaagtagataatccataggtgacttgatttggtggtaacaagac 217  Q
    ||||||| || |||||||| ||||||||||||||||||||||| ||||||||||    
T  33387726 actctcgtgggaagtagattatccataggtgacttgatttggtcgtaacaagac 33387779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 105
Target Start/End: Original strand, 33262056 - 33262118
Alignment:
Q  43 ttgaattcttgtatatcttgtttacatacccaacgatacccgcaactctcgacctccaaacct 105  Q
    ||||| |||||||  |||||||||||||||||| |||||||||||||||  ||||||| ||||    
T  33262056 ttgaactcttgtaggtcttgtttacatacccaatgatacccgcaactcttcacctccatacct 33262118  T

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Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 42 - 100
Target Start/End: Original strand, 33271278 - 33271336
Alignment:
Q  42 attgaattcttgtatatcttgtttacatacccaacgatacccgcaactctcgacctcca 100  Q
    |||||| |||||||  ||||||||||||| ||||||||||||||||||||  |||||||    
T  33271278 attgaactcttgtaggtcttgtttacatatccaacgatacccgcaactcttcacctcca 33271336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 104
Target Start/End: Original strand, 33398526 - 33398572
Alignment:
Q  58 tcttgtttacatacccaacgatacccgcaactctcgacctccaaacc 104  Q
    ||||||||||||||||||||||||||||||||||  ||||| |||||    
T  33398526 tcttgtttacatacccaacgatacccgcaactcttcacctcaaaacc 33398572  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 103
Target Start/End: Original strand, 33303935 - 33303995
Alignment:
Q  43 ttgaattcttgtatatcttgtttacatacccaacgatacccgcaactctcgacctccaaac 103  Q
    ||||||||||| |  |||| |||||||||||| ||||||||||||||||  ||||||||||    
T  33303935 ttgaattcttgcaggtcttctttacatacccaccgatacccgcaactcttcacctccaaac 33303995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 58 - 89
Target Start/End: Original strand, 33409438 - 33409469
Alignment:
Q  58 tcttgtttacatacccaacgatacccgcaact 89  Q
    ||||||||||||||||||||||||||||||||    
T  33409438 tcttgtttacatacccaacgatacccgcaact 33409469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 166 - 217
Target Start/End: Complemental strand, 33644992 - 33644941
Alignment:
Q  166 tctcggggtaagtagataatccataggtgacttgatttggtggtaacaagac 217  Q
    ||||| || |||||||| ||||||||||||||||||||||| |||| |||||    
T  33644992 tctcgagggaagtagattatccataggtgacttgatttggtcgtaataagac 33644941  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 39 - 89
Target Start/End: Original strand, 33285044 - 33285094
Alignment:
Q  39 taaattgaattcttgtatatcttgtttacatacccaacgatacccgcaact 89  Q
    ||||||||| |||||||  ||||||||||||||||||||||| || |||||    
T  33285044 taaattgaactcttgtaggtcttgtttacatacccaacgatatccacaact 33285094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 91
Target Start/End: Complemental strand, 33645094 - 33645061
Alignment:
Q  58 tcttgtttacatacccaacgatacccgcaactct 91  Q
    |||||||||||||||||||||||||| |||||||    
T  33645094 tcttgtttacatacccaacgatacccacaactct 33645061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 33409538 - 33409590
Alignment:
Q  164 actctcggggtaagtagataatccataggtgacttgatttggtggtaacaaga 216  Q
    |||||||||| |||||||  | ||||||||||||||||||||| |||| ||||    
T  33409538 actctcgggggaagtagactagccataggtgacttgatttggttgtaataaga 33409590  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 43 - 100
Target Start/End: Complemental strand, 17441458 - 17441401
Alignment:
Q  43 ttgaattcttgtatatcttgtttacatacccaacgatacccgcaactctcgacctcca 100  Q
    ||||| |||||||  ||||||||||||||||||||||||||||||||||  |||||||    
T  17441458 ttgaactcttgtaggtcttgtttacatacccaacgatacccgcaactcttcacctcca 17441401  T

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Target: scaffold1408 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 83 - 128
Alignment:
Q  43 ttgaattcttgtatatcttgtttacatacccaacgatacccgcaac 88  Q
    ||||| |||||||  | |||||||||||||||||||||||||||||    
T  83 ttgaactcttgtaagttttgtttacatacccaacgatacccgcaac 128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 202 - 246
Alignment:
Q  162 gtactctcggggtaagtagataatccataggtgacttgatttggt 206  Q
    |||||||||||| |||||||  | |||||||||||||||||||||    
T  202 gtactctcggggaaagtagactagccataggtgacttgatttggt 246  T

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Target: scaffold0428 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 88
Target Start/End: Original strand, 5829 - 5874
Alignment:
Q  43 ttgaattcttgtatatcttgtttacatacccaacgatacccgcaac 88  Q
    ||||| |||||||  | |||||||||||||||||||||||||||||    
T  5829 ttgaactcttgtaagttttgtttacatacccaacgatacccgcaac 5874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 5948 - 5992
Alignment:
Q  162 gtactctcggggtaagtagataatccataggtgacttgatttggt 206  Q
    |||||||||||| |||||||  | |||||||||||||||||||||    
T  5948 gtactctcggggaaagtagactagccataggtgacttgatttggt 5992  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 35
Target Start/End: Complemental strand, 31473210 - 31473181
Alignment:
Q  6 ctttcgagttaaggaatttttgtgattcat 35  Q
    ||||||||||||||||||||||||||||||    
T  31473210 ctttcgagttaaggaatttttgtgattcat 31473181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 107
Target Start/End: Complemental strand, 31485350 - 31485286
Alignment:
Q  43 ttgaattcttgtatatcttgtttacatacccaacgatacccgcaactctcgacctccaaaccttc 107  Q
    ||||| ||||| | ||| || ||| ||||||||||||||||||||||||  || |||||||||||    
T  31485350 ttgaactcttgcagatcctgcttaaatacccaacgatacccgcaactcttcacttccaaaccttc 31485286  T

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