View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8899_low_57 (Length: 371)
Name: NF8899_low_57
Description: NF8899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8899_low_57 |
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Alignment Details
Target: chr6 (Bit Score: 155; Significance: 3e-82; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 139 - 357
Target Start/End: Complemental strand, 29831951 - 29831744
Alignment:
| Q |
139 |
agaaaaagcataatattttgtcttaatgcaaa-ttaacttcattgtgaaattgtgatcgagtaagttggattatattatggtccttatgagcatagctaa |
237 |
Q |
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| T |
29831951 |
agaaaaagcataatattttgtcttaatgcaaaattaacttcatcgtgaaattgtgatcgagtaagttggattatattatggtccttatgagcatagctaa |
29831852 |
T |
|
| Q |
238 |
cttggtagatatctatgtaagaatcagggtttgaattaaggattttagatttattcatttttgcgagtgaattttttggcactatgttacttgaacaaaa |
337 |
Q |
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| T |
29831851 |
cttggtagacatcta------------gggttgaattaaggattttagatttattcattttagcgagtgaattttttggcactatgttacttgaacaaaa |
29831764 |
T |
|
| Q |
338 |
caaaaacaattgtattatat |
357 |
Q |
| |
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|||||||||||||||||||| |
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| T |
29831763 |
caaaaacaattgtattatat |
29831744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 139 - 357
Target Start/End: Complemental strand, 28473418 - 28473210
Alignment:
| Q |
139 |
agaaaaagcataatattttgtcttaatgcaaa-ttaacttcattgtgaaattgtgatcgagtaagttggattatattatggtccttatgagcatagctaa |
237 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28473418 |
agaaaaagcataatattttgtcttaatgcaaaattaacttcatcgtgaaattgtgatcgagtaagttggattatattatggtccttatgagcatagctaa |
28473319 |
T |
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| Q |
238 |
cttggtagatatctatgtaagaatcagggtttgaattaaggattttagatttattcatttttgcgagtgaa-ttttttggcactatgttacttgaacaaa |
336 |
Q |
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| T |
28473318 |
cttggtagacatcta------------gggttgaattaaggattttagatttattcattttagcgagtgaatttttttggcactatgttacttgaacaaa |
28473231 |
T |
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| Q |
337 |
acaaaaacaattgtattatat |
357 |
Q |
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||||||||||||||||||||| |
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| T |
28473230 |
acaaaaacaattgtattatat |
28473210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 152 - 353
Target Start/End: Complemental strand, 29819412 - 29819211
Alignment:
| Q |
152 |
tattttgtcttaatgcaaattaacttcattgtgaaattgtgatcgagtaagttggattatattatggtccttatgagcatagctaacttggtagatatct |
251 |
Q |
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|||||| | |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||| | |||| |
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| T |
29819412 |
tattttatgttaatgcaaattaacttcatcatgacattgtgatcgagtaagttggattatattatggttcctatgagtatagctaacttggtaaacatct |
29819313 |
T |
|
| Q |
252 |
atgtaagaatcagggtttgaattaaggattttagatttattcatttttgcgagtgaattttttggcactatgttacttgaacaaaacaaaaacaattgta |
351 |
Q |
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| T |
29819312 |
atataagaattagagtttgaattctggattttcgatttattcattttagcgagtgaatatcttagcactatgctacttaaacaaaacaaaaacaattcta |
29819213 |
T |
|
| Q |
352 |
tt |
353 |
Q |
| |
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|| |
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|
| T |
29819212 |
tt |
29819211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 28473572 - 28473530
Alignment:
| Q |
15 |
agagagtatatttcatttaataaggtattttaaaatacctttc |
57 |
Q |
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| T |
28473572 |
agagagtatatttgatttaataaggtattttaaaatacctttc |
28473530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 29819940 - 29819898
Alignment:
| Q |
15 |
agagagtatatttcatttaataaggtattttaaaatacctttc |
57 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||| |
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|
| T |
29819940 |
agagagtatatttgatttaataaggtattttaaaatacctttc |
29819898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 57
Target Start/End: Complemental strand, 29832106 - 29832064
Alignment:
| Q |
15 |
agagagtatatttcatttaataaggtattttaaaatacctttc |
57 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
29832106 |
agagagtatatttgatttaataaggtattttaaaatacctttc |
29832064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 152 - 353
Target Start/End: Complemental strand, 5720950 - 5720749
Alignment:
| Q |
152 |
tattttgtcttaatgcaaattaacttcattgtgaaattgtgatcgagtaagttggattatattatggtccttatgagcatagctaacttggtagatatct |
251 |
Q |
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|||||| | |||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||| | |||||| ||||||||||||||| | |||| |
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| T |
5720950 |
tattttatgttaatgcaaattaacttcatcatgacattgtgatcgagtaagttggattatattatggttcctatgagtatagctaacttggtaaacatct |
5720851 |
T |
|
| Q |
252 |
atgtaagaatcagggtttgaattaaggattttagatttattcatttttgcgagtgaattttttggcactatgttacttgaacaaaacaaaaacaattgta |
351 |
Q |
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| T |
5720850 |
atataagaattagagtttgaattctggattttcgatttattcattttagcgagtgaatatcttagcactatgctacttaaacaaaacaaaaacaattcta |
5720751 |
T |
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| Q |
352 |
tt |
353 |
Q |
| |
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|| |
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|
| T |
5720750 |
tt |
5720749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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