View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8899_low_59 (Length: 359)

Name: NF8899_low_59
Description: NF8899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8899_low_59
NF8899_low_59
[»] chr5 (14 HSPs)
chr5 (15-166)||(11833245-11833396)
chr5 (177-341)||(11832991-11833156)
chr5 (58-132)||(18191887-18191961)
chr5 (57-133)||(16411578-16411653)
chr5 (61-132)||(9333599-9333670)
chr5 (61-132)||(9354427-9354498)
chr5 (67-132)||(17037540-17037605)
chr5 (67-132)||(31069000-31069065)
chr5 (63-111)||(28080093-28080141)
chr5 (67-118)||(23679438-23679489)
chr5 (67-118)||(23855322-23855373)
chr5 (60-110)||(17535361-17535411)
chr5 (69-118)||(5079116-5079165)
chr5 (57-142)||(30786254-30786339)
[»] chr4 (4 HSPs)
chr4 (50-132)||(24559033-24559115)
chr4 (55-132)||(45641638-45641713)
chr4 (67-130)||(47066074-47066137)
chr4 (67-130)||(53300348-53300411)
[»] chr3 (9 HSPs)
chr3 (57-129)||(5498465-5498537)
chr3 (57-142)||(27713467-27713549)
chr3 (65-130)||(1613253-1613318)
chr3 (57-132)||(27259483-27259558)
chr3 (67-130)||(1627987-1628050)
chr3 (61-132)||(16457369-16457440)
chr3 (69-118)||(1654575-1654624)
chr3 (57-142)||(9633470-9633555)
chr3 (71-132)||(26707860-26707921)
[»] chr2 (4 HSPs)
chr2 (60-130)||(41573383-41573453)
chr2 (57-132)||(15540336-15540412)
chr2 (67-130)||(30267000-30267063)
chr2 (69-118)||(31342768-31342817)
[»] chr6 (8 HSPs)
chr6 (57-111)||(6673677-6673731)
chr6 (67-118)||(15690435-15690486)
chr6 (61-132)||(34374816-34374887)
chr6 (67-129)||(12591830-12591892)
chr6 (91-132)||(10935819-10935860)
chr6 (69-132)||(16734804-16734867)
chr6 (57-107)||(1942556-1942606)
chr6 (69-118)||(11936819-11936868)
[»] chr1 (7 HSPs)
chr1 (57-142)||(28636890-28636975)
chr1 (57-132)||(12189939-12190014)
chr1 (67-130)||(16222775-16222838)
chr1 (67-118)||(51758750-51758801)
chr1 (90-132)||(3399642-3399684)
chr1 (57-111)||(18308135-18308189)
chr1 (67-132)||(37097378-37097443)
[»] chr8 (7 HSPs)
chr8 (67-118)||(17634523-17634574)
chr8 (61-132)||(29553620-29553691)
chr8 (67-118)||(5528740-5528791)
chr8 (65-132)||(6403588-6403655)
chr8 (61-132)||(31347340-31347411)
chr8 (69-118)||(25638806-25638855)
chr8 (69-118)||(28249127-28249176)
[»] chr7 (6 HSPs)
chr7 (58-132)||(30089723-30089797)
chr7 (60-110)||(14803120-14803170)
chr7 (60-110)||(15250114-15250164)
chr7 (69-118)||(4685455-4685504)
chr7 (57-97)||(3234314-3234354)
chr7 (70-142)||(20277388-20277460)
[»] scaffold0007 (1 HSPs)
scaffold0007 (57-97)||(8732-8772)


Alignment Details
Target: chr5 (Bit Score: 140; Significance: 3e-73; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 15 - 166
Target Start/End: Complemental strand, 11833396 - 11833245
Alignment:
Q  15 agagacatacatatatgctcaaatctcgtgttcaaactagatcataattgagatttagtaacatttgacaaatgtaactaaatcatgaaaaatgttatta 114  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11833396 agagacatacatatatgctcaaatcttgtgttcaaactagatcataattgagatttagtaacatttgacaaatgtaactaaatcatgaaaaatgttatta 11833297  T
Q  115 attatatctagtaacattaaaataattgagtaaaggccattttactaaagag 166  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  11833296 attatatctagcaacattaaaataattgtgtaaaggccattttactaaagag 11833245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 177 - 341
Target Start/End: Complemental strand, 11833156 - 11832991
Alignment:
Q  177 aagtaccaacaaccgcaagcacgaagattcacgatgctttttctgcaagagatgacgaagatagcaaaaatcaatgaaaccttatcaaaattttaagcta 276  Q
    |||||||||||||||||||| ||| |||||||||||||||||| ||||| ||  || ||||||||||||||||||||| |||||||||||||||||||||    
T  11833156 aagtaccaacaaccgcaagcgcgacgattcacgatgctttttcggcaagcgacaacaaagatagcaaaaatcaatgaatccttatcaaaattttaagcta 11833057  T
Q  277 at-aaatgaaaccaaataaaacttgaaatcatgaatccattgaaacctaatcgaagatgaataata 341  Q
    || || ||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11833056 atcaattgaaaccaaaataaacttgaaatcatgaatccattgaaaccgaatcgaagatgaataata 11832991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 132
Target Start/End: Complemental strand, 18191961 - 18191887
Alignment:
Q  58 ataattgagatttagtaacatttgacaaatgtaactaaatcatgaaaaatgttattaattatatctagtaacatt 132  Q
    |||||||||||||||||||| |||| || ||||||||||| | ||||||||||| |||||| || ||||||||||    
T  18191961 ataattgagatttagtaacaattgaaaattgtaactaaattaagaaaaatgttactaattaaatttagtaacatt 18191887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 57 - 133
Target Start/End: Original strand, 16411578 - 16411653
Alignment:
Q  57 cataattgagatttagtaacatttgacaaatgtaactaaatcatgaaaaatgttattaattatatctagtaacatta 133  Q
    ||||| |||| ||||||||||||||| |||| | ||||||||| ||||||||||| | |||||||||||||||||||    
T  16411578 cataactgagctttagtaacatttga-aaatattactaaatcacgaaaaatgttactgattatatctagtaacatta 16411653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 132
Target Start/End: Complemental strand, 9333670 - 9333599
Alignment:
Q  61 attgagatttagtaacatttgacaaatgtaactaaatcatgaaaaatgttattaattatatctagtaacatt 132  Q
    |||||||||| |||||| |||| || |||||| |||||| ||||||||||| |||||| || ||||||||||    
T  9333670 attgagattttgtaacaattgaaaattgtaacaaaatcaagaaaaatgttactaattaaatttagtaacatt 9333599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 132
Target Start/End: Complemental strand, 9354498 - 9354427
Alignment:
Q  61 attgagatttagtaacatttgacaaatgtaactaaatcatgaaaaatgttattaattatatctagtaacatt 132  Q
    ||||||||||||||||| |||| || ||||||| ||||| ||||||||||| |||||| || || |||||||    
T  9354498 attgagatttagtaacaattgaaaattgtaactgaatcaagaaaaatgttactaattaaatttaataacatt 9354427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 132
Target Start/End: Original strand, 17037540 - 17037605
Alignment:
Q  67 atttagtaacatttgacaaatgtaactaaatcatgaaaaatgttattaattatatctagtaacatt 132  Q
    ||||||||||| |||| ||  |||||||||||| ||||||||||| |||||| || ||||||||||    
T  17037540 atttagtaacacttgaaaatcgtaactaaatcaagaaaaatgttactaattaaatttagtaacatt 17037605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 67 - 132
Target Start/End: Complemental strand, 31069065 - 31069000
Alignment:
Q  67 atttagtaacatttgacaaatgtaactaaatcatgaaaaatgttattaattatatctagtaacatt 132  Q
    ||||||||||| || | || ||||||||||||| ||||||||||| |||||| || ||||||||||    
T  31069065 atttagtaacacttaaaaattgtaactaaatcaagaaaaatgttactaattaaatttagtaacatt 31069000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 111
Target Start/End: Original strand, 28080093 - 28080141
Alignment:
Q  63 tgagatttagtaacatttgacaaatgtaactaaatcatgaaaaatgtta 111  Q
    |||||||||||||||||| | |||||||| ||||||| |||||||||||    
T  28080093 tgagatttagtaacatttaaaaaatgtaattaaatcaagaaaaatgtta 28080141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 118
Target Start/End: Original strand, 23679438 - 23679489
Alignment:
Q  67 atttagtaacatttgacaaatgtaactaaatcatgaaaaatgttattaatta 118  Q
    |||||| |||| |||| || ||||||||||||| ||||||||||||||||||    
T  23679438 atttagcaacacttgaaaattgtaactaaatcaagaaaaatgttattaatta 23679489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 118
Target Start/End: Complemental strand, 23855373 - 23855322
Alignment:
Q  67 atttagtaacatttgacaaatgtaactaaatcatgaaaaatgttattaatta 118  Q
    |||||| |||| |||| || ||||||||||||| ||||||||||||||||||    
T  23855373 atttagcaacacttgaaaattgtaactaaatcaagaaaaatgttattaatta 23855322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 17535361 - 17535411
Alignment:
Q  60 aattgagatttagtaacatttgacaaatgtaactaaatcatgaaaaatgtt 110  Q
    ||||||||| |||||||  |||| |||||||||||||||| ||||||||||    
T  17535361 aattgagatctagtaacggttgaaaaatgtaactaaatcaagaaaaatgtt 17535411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 118
Target Start/End: Complemental strand, 5079165 - 5079116
Alignment:
Q  69 ttagtaacatttgacaaatgtaactaaatcatgaaaaatgttattaatta 118  Q
    ||||||||| |||| || ||||||||||||| ||||||||||| ||||||    
T  5079165 ttagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaatta 5079116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 142
Target Start/End: Original strand, 30786254 - 30786339
Alignment:
Q  57 cataattgagatttagtaacatttgacaaatgtaactaaatcatgaaaaatgttattaattatatctagtaacattaaaataattg 142  Q
    ||||||| |||| |||||||| |||| || ||||||| ||||| ||||||||||| | |||  || ||||||||||  ||||||||    
T  30786254 cataattaagatctagtaacacttgaaaattgtaacttaatcaagaaaaatgttactgattcaatttagtaacatttgaataattg 30786339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 50 - 132
Target Start/End: Complemental strand, 24559115 - 24559033
Alignment:
Q  50 actagatcataattgagatttagtaacatttgacaaatgtaactaaatcatgaaaaatgttattaattatatctagtaacatt 132  Q
    |||||| ||||||||||||||||||||| || | |||||||||||||||| ||||||||||| |||||| || ||||||||||    
T  24559115 actagaacataattgagatttagtaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatt 24559033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 55 - 132
Target Start/End: Original strand, 45641638 - 45641713
Alignment:
Q  55 atcataattgagatttagtaacatttgacaaatgtaactaaatcatgaaaaatgttattaattatatctagtaacatt 132  Q
    |||||||||||||| ||||||||||| | |||||  ||   |||||||||||||||| ||||||||||||||||||||    
T  45641638 atcataattgagatctagtaacatttaaaaaatggtac--catcatgaaaaatgttactaattatatctagtaacatt 45641713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 47066137 - 47066074
Alignment:
Q  67 atttagtaacatttgacaaatgtaactaaatcatgaaaaatgttattaattatatctagtaaca 130  Q
    ||||||||||| |||| || ||||||||||||| ||||||||||| |||||| || ||||||||    
T  47066137 atttagtaacacttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagtaaca 47066074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 53300348 - 53300411
Alignment:
Q  67 atttagtaacatttgacaaatgtaactaaatcatgaaaaatgttattaattatatctagtaaca 130  Q
    ||||||||||| |||| || ||||| ||||||| ||||||||||| |||||| || ||||||||    
T  53300348 atttagtaacacttgaaaattgtaattaaatcaagaaaaatgttagtaattaaatttagtaaca 53300411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 129
Target Start/End: Original strand, 5498465 - 5498537
Alignment:
Q  57 cataattgagatttagtaacatttgacaaatgtaactaaatcatgaaaaatgttattaattatatctagtaac 129  Q
    ||||||||||||||||||||| || | |||||||||||||||| ||||||||||| |||||| || |||||||    
T  5498465 cataattgagatttagtaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaac 5498537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 142
Target Start/End: Complemental strand, 27713549 - 27713467
Alignment:
Q  57 cataattgagatttagtaacatttgacaaatgtaactaaatcatgaaaaatgttattaattatatctagtaacattaaaataattg 142  Q
    |||||||||||||||||||||||| | |||||||||||| ||   ||||| |||| |||||| || |||||||||| |||||||||    
T  27713549 cataattgagatttagtaacatttaaaaaatgtaactaattc---aaaaaagttactaattaaatttagtaacatttaaataattg 27713467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 65 - 130
Target Start/End: Complemental strand, 1613318 - 1613253
Alignment:
Q  65 agatttagtaacatttgacaaatgtaactaaatcatgaaaaatgttattaattatatctagtaaca 130  Q
    ||||||||||||| |||| |||||||||||||||| ||||||||||| ||| || || ||||||||    
T  1613318 agatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaaca 1613253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 132
Target Start/End: Complemental strand, 27259558 - 27259483
Alignment:
Q  57 cataattgagatttagtaacatttgacaaatgtaactaaatcatgaaaaatgttattaattatatctagtaacatt 132  Q
    ||||||||||||||||||||| |||| || | | ||||||||| | ||||||||| |||||| || ||||||||||    
T  27259558 cataattgagatttagtaacaattgaaaactattactaaatcaagcaaaatgttactaattaaatttagtaacatt 27259483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 130
Target Start/End: Complemental strand, 1628050 - 1627987
Alignment:
Q  67 atttagtaacatttgacaaatgtaactaaatcatgaaaaatgttattaattatatctagtaaca 130  Q
    ||||||||||| |||| || ||||||||||||| ||||||| ||| |||||| || ||||||||    
T  1628050 atttagtaacacttgaaaattgtaactaaatcaagaaaaatattactaattaaatttagtaaca 1627987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 61 - 132
Target Start/End: Complemental strand, 16457440 - 16457369
Alignment:
Q  61 attgagatttagtaacatttgacaaatgtaactaaatcatgaaaaatgttattaattatatctagtaacatt 132  Q
    ||||||||| |  |||| |||| || ||||||||||||| ||||||||||| |||||| || ||||||||||    
T  16457440 attgagattcaacaacaattgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagtaacatt 16457369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 118
Target Start/End: Original strand, 1654575 - 1654624
Alignment:
Q  69 ttagtaacatttgacaaatgtaactaaatcatgaaaaatgttattaatta 118  Q
    ||||||||| |||| || ||||||||||||| ||||||||||| ||||||    
T  1654575 ttagtaacaattgaaaattgtaactaaatcaagaaaaatgttactaatta 1654624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 142
Target Start/End: Complemental strand, 9633555 - 9633470
Alignment:
Q  57 cataattgagatttagtaacatttgacaaatgtaactaaatcatgaaaaatgttattaattatatctagtaacattaaaataattg 142  Q
    ||||||||||||||||||||| |||| || | | ||||||||   |||||||||| |||||| || |||| ||||| ||| |||||    
T  9633555 cataattgagatttagtaacacttgaaaactattactaaatcgaaaaaaatgttactaattaaatttagttacatttaaacaattg 9633470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 132
Target Start/End: Original strand, 26707860 - 26707921
Alignment:
Q  71 agtaacatttgacaaatgtaactaaatcatgaaaaatgttattaattatatctagtaacatt 132  Q
    |||||||||||| ||  || ||||||||| ||||||||||| |||||| || ||||||||||    
T  26707860 agtaacatttgaaaatggttactaaatcaagaaaaatgttactaattaaatttagtaacatt 26707921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 60 - 130
Target Start/End: Original strand, 41573383 - 41573453
Alignment:
Q  60 aattgagatttagtaacatttgacaaatgtaactaaatcatgaaaaatgttattaattatatctagtaaca 130  Q
    ||||||||||||||||||||  | |||||||||||||||| ||||||||||| |||||| || ||||||||    
T  41573383 aattgagatttagtaacattcaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaaca 41573453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 57 - 132
Target Start/End: Complemental strand, 15540412 - 15540336
Alignment:
Q  57 cataattgagatttagtaacatttgacaaatgtaactaaatcatgaaaa-atgttattaattatatctagtaacatt 132  Q
    |||||||||| ||||||||||||||| || | | |||||||||  |||| |||||| ||||||||||||||||||||    
T  15540412 cataattgagctttagtaacatttgaaaagtattactaaatcacaaaaatatgttactaattatatctagtaacatt 15540336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 30267000 - 30267063
Alignment:
Q  67 atttagtaacatttgacaaatgtaactaaatcatgaaaaatgttattaattatatctagtaaca 130  Q
    ||||||||||| |||| || ||||||||||||| ||||||||||| |||||| || ||||||||    
T  30267000 atttagtaacacttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagtaaca 30267063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 118
Target Start/End: Complemental strand, 31342817 - 31342768
Alignment:
Q  69 ttagtaacatttgacaaatgtaactaaatcatgaaaaatgttattaatta 118  Q
    ||||||||| |||| || ||||||||||||| ||||||||||| ||||||    
T  31342817 ttagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaatta 31342768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 57 - 111
Target Start/End: Complemental strand, 6673731 - 6673677
Alignment:
Q  57 cataattgagatttagtaacatttgacaaatgtaactaaatcatgaaaaatgtta 111  Q
    ||||||| ||||||||||||| |||| |||||||||||||||| |||||||||||    
T  6673731 cataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgtta 6673677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 118
Target Start/End: Original strand, 15690435 - 15690486
Alignment:
Q  67 atttagtaacatttgacaaatgtaactaaatcatgaaaaatgttattaatta 118  Q
    |||||||||||||||| || ||||||||||||| ||||||||||| ||||||    
T  15690435 atttagtaacatttgaaaattgtaactaaatcaagaaaaatgttactaatta 15690486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 132
Target Start/End: Original strand, 34374816 - 34374887
Alignment:
Q  61 attgagatttagtaacatttgacaaatgtaactaaatcatgaaaaatgttattaattatatctagtaacatt 132  Q
    ||||||||| ||||||| || | |||||||| ||||||| ||||||||||| ||||||||| | ||||||||    
T  34374816 attgagattaagtaacaattaaaaaatgtaattaaatcaagaaaaatgttactaattatattttgtaacatt 34374887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 129
Target Start/End: Original strand, 12591830 - 12591892
Alignment:
Q  67 atttagtaacatttgacaaatgtaactaaatcatgaaaaatgttattaattatatctagtaac 129  Q
    ||||||||||| |||| || ||||||||||||| ||||||||||| |||||| || |||||||    
T  12591830 atttagtaacacttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagtaac 12591892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 91 - 132
Target Start/End: Complemental strand, 10935860 - 10935819
Alignment:
Q  91 actaaatcatgaaaaatgttattaattatatctagtaacatt 132  Q
    ||||||||||||||||||||| |||||||||| |||||||||    
T  10935860 actaaatcatgaaaaatgttactaattatatccagtaacatt 10935819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 69 - 132
Target Start/End: Original strand, 16734804 - 16734867
Alignment:
Q  69 ttagtaacatttgacaaatgtaactaaatcatgaaaaatgttattaattatatctagtaacatt 132  Q
    ||||||||| |||| || ||||||||||||| ||||||||||| |||||| || ||| ||||||    
T  16734804 ttagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacatt 16734867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 107
Target Start/End: Original strand, 1942556 - 1942606
Alignment:
Q  57 cataattgagatttagtaacatttgacaaatgtaactaaatcatgaaaaat 107  Q
    ||||||| |||||| ||||||||||| || ||||||||||||| |||||||    
T  1942556 cataattaagatttggtaacatttgataattgtaactaaatcaagaaaaat 1942606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 118
Target Start/End: Complemental strand, 11936868 - 11936819
Alignment:
Q  69 ttagtaacatttgacaaatgtaactaaatcatgaaaaatgttattaatta 118  Q
    ||||||||| |||| || ||||||||||||| ||||||||||| ||||||    
T  11936868 ttagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaatta 11936819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 142
Target Start/End: Original strand, 28636890 - 28636975
Alignment:
Q  57 cataattgagatttagtaacatttgacaaatgtaactaaatcatgaaaaatgttattaattatatctagtaacattaaaataattg 142  Q
    ||||||| |||| ||||||||||| | || ||||||||||||| ||||||||||| |||||  || ||||||||||  ||||||||    
T  28636890 cataattaagatctagtaacatttaaaaattgtaactaaatcaagaaaaatgttactaattcaatttagtaacatttgaataattg 28636975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 57 - 132
Target Start/End: Original strand, 12189939 - 12190014
Alignment:
Q  57 cataattgagatttagtaacatttgacaaatgtaactaaatcatgaaaaatgttattaattatatctagtaacatt 132  Q
    ||||||||||| |||| |||| || | |||||||||||||||| ||||||| ||| |||||| || ||||||||||    
T  12189939 cataattgagaattagaaacaattaaaaaatgtaactaaatcaagaaaaatattactaattaaatttagtaacatt 12190014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 130
Target Start/End: Original strand, 16222775 - 16222838
Alignment:
Q  67 atttagtaacatttgacaaatgtaactaaatcatgaaaaatgttattaattatatctagtaaca 130  Q
    |||||||||||||||| || ||||||||||||| ||||||||||| |||| | || ||||||||    
T  16222775 atttagtaacatttgaaaattgtaactaaatcaagaaaaatgttactaataaaatttagtaaca 16222838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 118
Target Start/End: Original strand, 51758750 - 51758801
Alignment:
Q  67 atttagtaacatttgacaaatgtaactaaatcatgaaaaatgttattaatta 118  Q
    |||||||||||||||| || ||||||||||||| ||||||||||| ||||||    
T  51758750 atttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaatta 51758801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 90 - 132
Target Start/End: Original strand, 3399642 - 3399684
Alignment:
Q  90 aactaaatcatgaaaaatgttattaattatatctagtaacatt 132  Q
    |||||||||||||||||||||| |||||| || ||||||||||    
T  3399642 aactaaatcatgaaaaatgttactaattaaatttagtaacatt 3399684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 57 - 111
Target Start/End: Original strand, 18308135 - 18308189
Alignment:
Q  57 cataattgagatttagtaacatttgacaaatgtaactaaatcatgaaaaatgtta 111  Q
    ||||||||| || ||||||||||||| || ||| ||||||||| |||||||||||    
T  18308135 cataattgacatctagtaacatttgaaaattgttactaaatcaagaaaaatgtta 18308189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 132
Target Start/End: Complemental strand, 37097443 - 37097378
Alignment:
Q  67 atttagtaacatttgacaaatgtaactaaatcatgaaaaatgttattaattatatctagtaacatt 132  Q
    ||||||||||| |||| || ||||||||||||| ||||||||||| | || | || ||||||||||    
T  37097443 atttagtaacacttgaaaattgtaactaaatcaagaaaaatgttactgataaaatttagtaacatt 37097378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 67 - 118
Target Start/End: Complemental strand, 17634574 - 17634523
Alignment:
Q  67 atttagtaacatttgacaaatgtaactaaatcatgaaaaatgttattaatta 118  Q
    |||||||||||||||| || ||||||||||||| ||||||||||| ||||||    
T  17634574 atttagtaacatttgaaaattgtaactaaatcaagaaaaatgttactaatta 17634523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 132
Target Start/End: Original strand, 29553620 - 29553691
Alignment:
Q  61 attgagatttagtaacatttgacaaatgtaactaaatcatgaaaaatgttattaattatatctagtaacatt 132  Q
    ||||||||||||||||| |||| || |||||| |||||| ||||||||||| |||||| || ||| ||||||    
T  29553620 attgagatttagtaacaattgaaaattgtaaccaaatcaagaaaaatgttactaattaaatttagcaacatt 29553691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 118
Target Start/End: Original strand, 5528740 - 5528791
Alignment:
Q  67 atttagtaacatttgacaaatgtaactaaatcatgaaaaatgttattaatta 118  Q
    ||||||||||| |||| || ||||||||||||| ||||||||||| ||||||    
T  5528740 atttagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaatta 5528791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 65 - 132
Target Start/End: Original strand, 6403588 - 6403655
Alignment:
Q  65 agatttagtaacatttgacaaatgtaactaaatcatgaaaaatgttattaattatatctagtaacatt 132  Q
    ||||||||||||| |||| |  ||||||||||| | ||||||||||| |||||| || ||||||||||    
T  6403588 agatttagtaacaattgaaatttgtaactaaattaagaaaaatgttactaattaaatttagtaacatt 6403655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 61 - 132
Target Start/End: Original strand, 31347340 - 31347411
Alignment:
Q  61 attgagatttagtaacatttgacaaatgtaactaaatcatgaaaaatgttattaattatatctagtaacatt 132  Q
    ||||| ||||||||||| |||| || |||||| |||||| |||||||| || |||||| || ||||||||||    
T  31347340 attgaaatttagtaacaattgaaaattgtaaccaaatcaagaaaaatgctactaattaaatttagtaacatt 31347411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 118
Target Start/End: Original strand, 25638806 - 25638855
Alignment:
Q  69 ttagtaacatttgacaaatgtaactaaatcatgaaaaatgttattaatta 118  Q
    ||||||||| |||| || ||||||||||||| ||||||||||| ||||||    
T  25638806 ttagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaatta 25638855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 118
Target Start/End: Complemental strand, 28249176 - 28249127
Alignment:
Q  69 ttagtaacatttgacaaatgtaactaaatcatgaaaaatgttattaatta 118  Q
    ||||||||| |||| || ||||||||||||| ||||||||||| ||||||    
T  28249176 ttagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaatta 28249127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 58 - 132
Target Start/End: Original strand, 30089723 - 30089797
Alignment:
Q  58 ataattgagatttagtaacatttgacaaatgtaactaaatcatgaaaaatgttattaattatatctagtaacatt 132  Q
    |||||||| || |||||||| |||| || ||| ||||||||| ||||||||||| | ||||||| ||||||||||    
T  30089723 ataattgacatctagtaacacttgaaaactgttactaaatcaagaaaaatgttactgattatatttagtaacatt 30089797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 14803170 - 14803120
Alignment:
Q  60 aattgagatttagtaacatttgacaaatgtaactaaatcatgaaaaatgtt 110  Q
    ||||||||| |||||||  |||| |||||||||||||||| ||||||||||    
T  14803170 aattgagatctagtaacggttgaaaaatgtaactaaatcaagaaaaatgtt 14803120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 110
Target Start/End: Complemental strand, 15250164 - 15250114
Alignment:
Q  60 aattgagatttagtaacatttgacaaatgtaactaaatcatgaaaaatgtt 110  Q
    ||||||||| |||||||  |||| |||||||||||||||| ||||||||||    
T  15250164 aattgagatctagtaacggttgaaaaatgtaactaaatcaagaaaaatgtt 15250114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 118
Target Start/End: Complemental strand, 4685504 - 4685455
Alignment:
Q  69 ttagtaacatttgacaaatgtaactaaatcatgaaaaatgttattaatta 118  Q
    ||||||||| |||| || ||||||||||||| ||||||||||| ||||||    
T  4685504 ttagtaacacttgaaaattgtaactaaatcaagaaaaatgttagtaatta 4685455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 3234314 - 3234354
Alignment:
Q  57 cataattgagatttagtaacatttgacaaatgtaactaaat 97  Q
    ||||||| ||||||||||||| |||| ||||||||||||||    
T  3234314 cataattaagatttagtaacagttgaaaaatgtaactaaat 3234354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 70 - 142
Target Start/End: Complemental strand, 20277460 - 20277388
Alignment:
Q  70 tagtaacatttgacaaatgtaactaaatcatgaaaaatgttattaattatatctagtaacattaaaataattg 142  Q
    |||||||| | || || |||||||||||||  |||||| |||||||||| || |||||||||| ||| |||||    
T  20277460 tagtaacactcgaaaattgtaactaaatcaaaaaaaatattattaattaaatttagtaacatttaaacaattg 20277388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 8732 - 8772
Alignment:
Q  57 cataattgagatttagtaacatttgacaaatgtaactaaat 97  Q
    ||||||| ||||||||||||| |||| ||||||||||||||    
T  8732 cataattaagatttagtaacagttgaaaaatgtaactaaat 8772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University