View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8899_low_68 (Length: 317)
Name: NF8899_low_68
Description: NF8899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8899_low_68 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-155; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 317
Target Start/End: Complemental strand, 40489529 - 40489227
Alignment:
| Q |
18 |
acatctacaacatttaactttacaagtttattat---acaaaaaccccataattggcatcacagctcaggttagaatgacaagaaaatggagaatgtgaa |
114 |
Q |
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| T |
40489529 |
acatctacaacatttaactttacaagtttattattatacaaaaactccataattggcatcacagctcaggttagaacgacaagaaaatggagaatgtgaa |
40489430 |
T |
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| Q |
115 |
actgatgagttgtgtttgtgaagaattggaaaattgcaacccacaaaacccaaatcatgatcttcagcactttctatctctacaagtgcctcacagaaca |
214 |
Q |
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| T |
40489429 |
actgatgagttgtgtttgtgaacaattggaaaattgcaacccacaaaacccaaatcatgatcttcagcactttctatctctacaagtgcctcacagaaca |
40489330 |
T |
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| Q |
215 |
agtcaacatcacaaggaagccatagaggaccatcatttctatatccatattcattctcaacatcttctaaaagagttttaaacaaaggatggttgaatat |
314 |
Q |
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| T |
40489329 |
agtcaacatcacaaggaagccatagaggaccatcatttctatatccatattcattctcaacatcttctaaaagagttttaaacaaaggatggttgaatat |
40489230 |
T |
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| Q |
315 |
ttt |
317 |
Q |
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||| |
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| T |
40489229 |
ttt |
40489227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 123 - 317
Target Start/End: Complemental strand, 40466439 - 40466245
Alignment:
| Q |
123 |
gttgtgtttgtgaagaattggaaaattgcaacccacaaaacccaaatcatgatcttcagcactttctatctctacaagtgcctcacagaacaagtcaaca |
222 |
Q |
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| T |
40466439 |
gttgtgtttgtgaacaattggaaaattgcaacccacaaaacccaaatcatgatcttcagcactttctatctctacaagtgcctcacagaacaagtcaaca |
40466340 |
T |
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| Q |
223 |
tcacaaggaagccatagaggaccatcatttctatatccatattcattctcaacatcttctaaaagagttttaaacaaaggatggttgaatatttt |
317 |
Q |
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| T |
40466339 |
tcacaaggaagccatagaggaccatcatttctatatccatattcattctcaacatcttctaaaagagttttaaacaaaggatggttgaatatttt |
40466245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 187 - 317
Target Start/End: Complemental strand, 40472711 - 40472581
Alignment:
| Q |
187 |
tctatctctacaagtgcctcacagaacaagtcaacatcacaaggaagccatagaggaccatcatttctatatccatattcattctcaacatcttctaaaa |
286 |
Q |
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| T |
40472711 |
tctatatctacaagtatctcacaaaataaatcaacgtcacaaggaaaccatagaggaccatcgtttctatatccatattcgttctcaacatcttccaaaa |
40472612 |
T |
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| Q |
287 |
gagttttaaacaaaggatggttgaatatttt |
317 |
Q |
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| T |
40472611 |
gagttttgaacaaaggatggttgaatatttt |
40472581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 217 - 296
Target Start/End: Complemental strand, 40480456 - 40480377
Alignment:
| Q |
217 |
tcaacatcacaaggaagccatagaggaccatcatttctatatccatattcattctcaacatcttctaaaagagttttaaa |
296 |
Q |
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| T |
40480456 |
tcaacgtcacaaggaagccatagaggaccatcacttttatatccatattcattgtcaacatcttctaaaagagttttaaa |
40480377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 266 - 315
Target Start/End: Complemental strand, 7624847 - 7624798
Alignment:
| Q |
266 |
cattctcaacatcttctaaaagagttttaaacaaaggatggttgaatatt |
315 |
Q |
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| T |
7624847 |
cattctcaacagctcctaaaagagttttaaacaaagggtgattgaatatt |
7624798 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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