View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8899_low_71 (Length: 312)
Name: NF8899_low_71
Description: NF8899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8899_low_71 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 5 - 312
Target Start/End: Complemental strand, 41376665 - 41376356
Alignment:
| Q |
5 |
actttggtgtttaaacattaggtatgacttagagttacacatggttcatgttagcactcagccagatggaacaaacaagactgctgttgttggtgttttg |
104 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41376665 |
actttggtctttaaacattaggtatgacttagagttacacatggttcatgttagcactcagccagatggaacaaacaagactgctgttgttggtgttttg |
41376566 |
T |
|
| Q |
105 |
tacaagtatggttcacctgatccatttctctccaaggtacgaacaacaaataattattatataaaaagtatggttc--aaatatatactcctaaatctan |
202 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || |||| ||||||||||||||| |||||||| ||||||||| ||||||||||| |
|
|
| T |
41376565 |
tacaagtatggttcacctgatccatttctctccaaggtacgaataaaaaattattattatataaaaaatatggttcaaaaatatataatcctaaatctat |
41376466 |
T |
|
| Q |
203 |
nnnnnnnnnnnnatacattcataatcttgtatatttacatatatgtcagctggtaaattacataatagaagttcctgatgaagaagaagagaaaagcata |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41376465 |
tttttaatttttatacattcataatcttgtatatttacatatatgtcagctggtaaattacataatagaagttcctgatgaagaagaagagaaaagcata |
41376366 |
T |
|
| Q |
303 |
ggggttattg |
312 |
Q |
| |
|
|||||||||| |
|
|
| T |
41376365 |
ggggttattg |
41376356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University