View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8899_low_73 (Length: 300)

Name: NF8899_low_73
Description: NF8899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8899_low_73
NF8899_low_73
[»] chr2 (2 HSPs)
chr2 (37-281)||(36443035-36443273)
chr2 (39-143)||(30393169-30393273)
[»] chr8 (3 HSPs)
chr8 (39-142)||(11539057-11539160)
chr8 (37-96)||(32978459-32978518)
chr8 (98-142)||(11049791-11049835)
[»] chr3 (2 HSPs)
chr3 (39-142)||(43491970-43492073)
chr3 (56-134)||(43752164-43752242)
[»] chr7 (5 HSPs)
chr7 (39-121)||(2916192-2916274)
chr7 (37-114)||(42597307-42597384)
chr7 (87-143)||(42597388-42597444)
chr7 (73-144)||(27035251-27035322)
chr7 (73-114)||(40519366-40519407)
[»] chr1 (4 HSPs)
chr1 (73-143)||(30518754-30518824)
chr1 (73-113)||(26515769-26515809)
chr1 (50-144)||(14614972-14615066)
chr1 (83-140)||(17985736-17985793)
[»] chr6 (1 HSPs)
chr6 (55-120)||(10385328-10385393)
[»] chr5 (1 HSPs)
chr5 (73-142)||(14791028-14791097)


Alignment Details
Target: chr2 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 37 - 281
Target Start/End: Original strand, 36443035 - 36443273
Alignment:
Q  37 catttttcgtagataagtgtctatttttctgtacggaaaagtcatgtttgaaccaatgtttatatatttaattacaacctaattacttatcactataagt 136  Q
    |||||||||||| ||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  36443035 catttttcgtagttaagtgtctattttt-tgtacgtaaaagtcat-tttgaaccaatgtttatatatttaattacaacctaattacttatcattataagt 36443132  T
Q  137 ggtgttga--nnnnnnnnnaattctttttataaaaagttgtcaagattacaactgaacctctataaattgtcgggaacggccttgttaagatttaagata 234  Q
    ||||||||           |||||||||||||||||||||||||||||||||||||      |||||||||| |||||||||||||||||||||||||||    
T  36443133 ggtgttgatttttttttttaattctttttataaaaagttgtcaagattacaactga------ataaattgtctggaacggccttgttaagatttaagata 36443226  T
Q  235 ccttatcctatgaatataattcaattgatagacattcgtttataaga 281  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||    
T  36443227 ccttatcctatgaacataattcaattgatagacattcgtttataaga 36443273  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 39 - 143
Target Start/End: Original strand, 30393169 - 30393273
Alignment:
Q  39 tttttcgtagataagtgtctatttttctgtacggaaaagtcatgtttgaaccaatgtttatatatttaattacaacctaattacttatcactataagtgg 138  Q
    |||||||| | ||| ||||||||| | ||||   |||||||||||||||||||||| | ||||||||||  ||||  |||||| |||||||||||||| |    
T  30393169 tttttcgttggtaaatgtctatttgtttgtagataaaagtcatgtttgaaccaatgctaatatatttaaccacaaattaattatttatcactataagtag 30393268  T
Q  139 tgttg 143  Q
    |||||    
T  30393269 tgttg 30393273  T

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Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 142
Target Start/End: Complemental strand, 11539160 - 11539057
Alignment:
Q  39 tttttcgtagataagtgtctatttttctgtacggaaaagtcatgtttgaaccaatgtttatatatttaattacaacctaattacttatcactataagtgg 138  Q
    |||||||||| |||  |||||||| | ||||   |||||||||||||||||||||| | |||||||||| || ||| |||||| ||||| ||||||| ||    
T  11539160 tttttcgtaggtaaaagtctatttgtttgtatataaaagtcatgtttgaaccaatgctcatatatttaactataacttaattatttatcgctataagagg 11539061  T
Q  139 tgtt 142  Q
    ||||    
T  11539060 tgtt 11539057  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 96
Target Start/End: Complemental strand, 32978518 - 32978459
Alignment:
Q  37 catttttcgtagataagtgtctatttttctgtacggaaaagtcatgtttgaaccaatgtt 96  Q
    ||||||| |||| ||||||||||||| |||||| | ||||||||||||| ||||||||||    
T  32978518 cattttttgtaggtaagtgtctatttgtctgtaggtaaaagtcatgtttaaaccaatgtt 32978459  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 11049791 - 11049835
Alignment:
Q  98 atatatttaattacaacctaattacttatcactataagtggtgtt 142  Q
    |||||||||| || ||| |||||| ||||||||||||||||||||    
T  11049791 atatatttaactataacttaattatttatcactataagtggtgtt 11049835  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 142
Target Start/End: Original strand, 43491970 - 43492073
Alignment:
Q  39 tttttcgtagataagtgtctatttttctgtacggaaaagtcatgtttgaaccaatgtttatatatttaattacaacctaattacttatcactataagtgg 138  Q
    |||||| ||||||| ||||||||| ||||||   ||||||||| ||| ||  |||  | |||||||||| |||||| ||||||||||||||||| |||||    
T  43491970 tttttcttagataaatgtctatttatctgtagataaaagtcatatttaaattaatactcatatatttaactacaacttaattacttatcactatgagtgg 43492069  T
Q  139 tgtt 142  Q
    ||||    
T  43492070 tgtt 43492073  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 134
Target Start/End: Original strand, 43752164 - 43752242
Alignment:
Q  56 tctatttttctgtacggaaaagtcatgtttgaaccaatgtttatatatttaattacaacctaattacttatcactataa 134  Q
    ||||||| | |||| | ||||||||||||||||||| |||| ||||||||||||||||  ||||||  |||||||||||    
T  43752164 tctatttatttgtaggtaaaagtcatgtttgaaccattgttcatatatttaattacaatttaattatctatcactataa 43752242  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 39 - 121
Target Start/End: Complemental strand, 2916274 - 2916192
Alignment:
Q  39 tttttcgtagataagtgtctatttttctgtacggaaaagtcatgtttgaaccaatgtttatatatttaattacaacctaatta 121  Q
    |||||||||| ||| ||||||||| ||||||   |||||||||||||||||||||  | |||||||||| |||||| ||||||    
T  2916274 tttttcgtaggtaaatgtctatttgtctgtagataaaagtcatgtttgaaccaattctcatatatttaactacaacttaatta 2916192  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 114
Target Start/End: Original strand, 42597307 - 42597384
Alignment:
Q  37 catttttcgtagataagtgtctatttttctgtacggaaaagtcatgtttgaaccaatgtttatatatttaattacaac 114  Q
    ||||||| |||| ||| |||||||||  |||||   |||||||||||||||||||||| | |||||||||||||||||    
T  42597307 cattttttgtaggtaaatgtctatttgactgtagataaaagtcatgtttgaaccaatgctaatatatttaattacaac 42597384  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 87 - 143
Target Start/End: Original strand, 42597388 - 42597444
Alignment:
Q  87 aaccaatgtttatatatttaattacaacctaattacttatcactataagtggtgttg 143  Q
    |||||||| | ||||||||||||||||| |||||| ||||| |||||||||||||||    
T  42597388 aaccaatgctaatatatttaattacaacttaattatttatccctataagtggtgttg 42597444  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 73 - 144
Target Start/End: Original strand, 27035251 - 27035322
Alignment:
Q  73 aaaagtcatgtttgaaccaatgtttatatatttaattacaacctaattacttatcactataagtggtgttga 144  Q
    ||||||||||||||||||| || |||||||||||| |||||| |||||   ||||||||||| | |||||||    
T  27035251 aaaagtcatgtttgaaccattgcttatatatttaactacaacttaattgtctatcactataaatagtgttga 27035322  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 40519366 - 40519407
Alignment:
Q  73 aaaagtcatgtttgaaccaatgtttatatatttaattacaac 114  Q
    |||||| |||||||||||| |||| |||||||||||||||||    
T  40519366 aaaagtaatgtttgaaccattgttgatatatttaattacaac 40519407  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 73 - 143
Target Start/End: Original strand, 30518754 - 30518824
Alignment:
Q  73 aaaagtcatgtttgaaccaatgtttatatatttaattacaacctaattacttatcactataagtggtgttg 143  Q
    |||||||||||||||||||||  | ||||| |||| |||||| |||||| |||| ||||||||||||||||    
T  30518754 aaaagtcatgtttgaaccaatactcatataattaactacaacttaattatttataactataagtggtgttg 30518824  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 113
Target Start/End: Original strand, 26515769 - 26515809
Alignment:
Q  73 aaaagtcatgtttgaaccaatgtttatatatttaattacaa 113  Q
    ||||||||||||||||||| ||||||||||||||| |||||    
T  26515769 aaaagtcatgtttgaaccattgtttatatatttaactacaa 26515809  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 144
Target Start/End: Original strand, 14614972 - 14615066
Alignment:
Q  50 taagtgtctatttttctgtacggaaaagtcatgtttgaaccaatgtttatatatttaattacaacctaattacttatcactataagtggtgttga 144  Q
    |||||||||| || |||||| | |||||||||||| || |  ||||| |||||||||| |||||  |||||| ||||| ||||||| || |||||    
T  14614972 taagtgtctaattgtctgtaggtaaaagtcatgttcgagcatatgttcatatatttaactacaatttaattatttatctctataagcggggttga 14615066  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 140
Target Start/End: Original strand, 17985736 - 17985793
Alignment:
Q  83 tttgaaccaatgtttatatatttaattacaacctaattacttatcactataagtggtg 140  Q
    |||||||||||| | |||||||| |||||| | |||||| || |||||||||||||||    
T  17985736 tttgaaccaatgctcatatatttcattacatcttaattatttttcactataagtggtg 17985793  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 10385393 - 10385328
Alignment:
Q  55 gtctatttttctgtacggaaaagtcatgtttgaaccaatgtttatatatttaattacaacctaatt 120  Q
    |||||||| || ||| | ||||||||||||||||||| | ||||||||||||| |||||| |||||    
T  10385393 gtctatttgtccgtaggtaaaagtcatgtttgaaccattatttatatatttaactacaacttaatt 10385328  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 142
Target Start/End: Original strand, 14791028 - 14791097
Alignment:
Q  73 aaaagtcatgtttgaaccaatgtttatatatttaattacaacctaattacttatcactataagtggtgtt 142  Q
    ||||||| |||||||||||||| |||||||||||| || ||| |||| | |||||||| ||| |||||||    
T  14791028 aaaagtcgtgtttgaaccaatgcttatatatttaactaaaacttaatcatttatcactttaaatggtgtt 14791097  T

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