View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8899_low_74 (Length: 300)
Name: NF8899_low_74
Description: NF8899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8899_low_74 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 19 - 290
Target Start/End: Original strand, 34311557 - 34311834
Alignment:
| Q |
19 |
catatgtcatttata-gaatcttcaagaaccatgcatgtagctttttacaacctataaatataacataccagcaattttnnnnnnnnn-----catcaat |
112 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| || ||||||| |
|
|
| T |
34311557 |
catatgtcatttatatgaatcttcaagaaccatgcatgcaactttttacaacctataaatataacataccagcaacttaaaaaaaaaaaaaaacatcaat |
34311656 |
T |
|
| Q |
113 |
accacaaaatatactccatcattttcttccctaagcaacacaacatgaggctagaacaactcaacatgttactcgtaccatttctcttgcttattcttgt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34311657 |
accacaaaatatactccatcattttcttccctaagcaacacaacatgaggctagaacaactcaacatgttactcgtaccatttctcttgcttattcttgt |
34311756 |
T |
|
| Q |
213 |
tggtaattttccttctaatgcaaaagggtcactattaccattcatagattctcccaacactctcttattcgatctctg |
290 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
34311757 |
tggttattttccttctaatgcaaaagggtcactattaccattcatagattctcccaacactctcttatccgatctctg |
34311834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 157 - 289
Target Start/End: Complemental strand, 34323273 - 34323138
Alignment:
| Q |
157 |
atgaggctagaacaactcaacatgttactcgtaccatttctcttgcttattctt---gttggtaattttccttctaatgcaaaagggtcactattaccat |
253 |
Q |
| |
|
||||||||| ||||||||||||||| || ||||| |||||||| |||||||| ||||||||||||||||| ||||||||||||| | | |||||| |
|
|
| T |
34323273 |
atgaggctacaacaactcaacatgtcgcttataccaattctcttgattattcttcttgttggtaattttccttccaatgcaaaagggttattgctaccat |
34323174 |
T |
|
| Q |
254 |
tcatagattctcccaacactctcttattcgatctct |
289 |
Q |
| |
|
|||| ||||| |||||||| ||||| | |||||||| |
|
|
| T |
34323173 |
tcatggattcacccaacacactcttgtccgatctct |
34323138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 239
Target Start/End: Original strand, 34314160 - 34314242
Alignment:
| Q |
157 |
atgaggctagaacaactcaacatgttactcgtaccatttctcttgcttattcttgttggtaattttccttctaatgcaaaagg |
239 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||| |||||||| ||||| |||| ||||||| | || |||||||| |
|
|
| T |
34314160 |
atgaggctacaacaactcaacatgttactagtaccatttttcttgcttgttcttactggtggttttcctaccaaagcaaaagg |
34314242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 210
Target Start/End: Complemental strand, 34305074 - 34305021
Alignment:
| Q |
157 |
atgaggctagaacaactcaacatgttactcgtaccatttctcttgcttattctt |
210 |
Q |
| |
|
||||||||| ||||||||||||||||||| ||||||||| |||||||| ||||| |
|
|
| T |
34305074 |
atgaggctacaacaactcaacatgttactagtaccatttttcttgcttgttctt |
34305021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 83
Target Start/End: Complemental strand, 34323453 - 34323390
Alignment:
| Q |
19 |
catatgtcatttatagaatcttcaagaaccatgcatgtagctttttacaacctataaatataaca |
83 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| | | ||||| |||||||||||| |||| |
|
|
| T |
34323453 |
catatgtcatttatagaatcttcaagaattatgcatgcaacatttta-aacctataaatacaaca |
34323390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 224
Target Start/End: Complemental strand, 34317578 - 34317511
Alignment:
| Q |
157 |
atgaggctagaacaactcaacatgttactcgtaccatttctcttgcttattcttgttggtaattttcc |
224 |
Q |
| |
|
||||||||| ||||||||||||||||||| |||| ||| ||||| || |||||| ||||| |||||| |
|
|
| T |
34317578 |
atgaggctacaacaactcaacatgttactagtactttttttcttgattgttcttgctggtagttttcc |
34317511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 33426001 - 33426045
Alignment:
| Q |
160 |
aggctagaacaactcaacatgttactcgtaccatttctcttgctt |
204 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||| |||||||| |
|
|
| T |
33426001 |
aggctacaacaactcaacatgttaccagtaccatttttcttgctt |
33426045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University