View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8899_low_76 (Length: 299)
Name: NF8899_low_76
Description: NF8899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8899_low_76 |
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Alignment Details
Target: chr6 (Bit Score: 260; Significance: 1e-145; HSPs: 11)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 14024380 - 14024097
Alignment:
| Q |
1 |
ctttagacctgtcatatatacctacatttatctttcatgatattgtatttcaagtttcaacttttttaaaattttatattttagactttatatctaaagt |
100 |
Q |
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| T |
14024380 |
ctttagacctctcatatatacttacatttatctttcatgatattgtttttcaagtttcaacttttttaaaattttaaattttagactttatatctaaagt |
14024281 |
T |
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| Q |
101 |
ggttaatacttaaactattatataggttggcaaaatcttgtgaatcttcaataaaggctactggatagtgtgttgtggatcatattaaggtgtgcaagaa |
200 |
Q |
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| T |
14024280 |
ggttaatacttaaactattatataggttggcaaaatcttgtgaatcttcaatcaaggctactggatagtgtgttgtggatcatattaaggtgtgcaagaa |
14024181 |
T |
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| Q |
201 |
agtccttctccacgaagataaatagtttctcctctttattgaaggctttgtgaattatttcccttgtaactctaggaagatgat |
284 |
Q |
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| T |
14024180 |
agtccttctccacgaagataaatagtatctcctctttattgaaggctttgtgaattatttcccttgtaactctaggaagatgat |
14024097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 28 - 126
Target Start/End: Complemental strand, 14046274 - 14046176
Alignment:
| Q |
28 |
ttatctttcatgatattgtatttcaagtttcaacttttttaaaattttatattttagactttatatctaaagtggttaatacttaaactattatatagg |
126 |
Q |
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| T |
14046274 |
ttatctttcatgatattgtgtttcaagttacaagttttctaaaaatttatattttggactttgtatctaatgaggttaacacttaaactattatatagg |
14046176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 62 - 150
Target Start/End: Complemental strand, 14106539 - 14106451
Alignment:
| Q |
62 |
ttttttaaaattttatattttagactttatatctaaagtggttaatacttaaactattatataggttggcaaaatcttgtgaatcttca |
150 |
Q |
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| T |
14106539 |
ttttttaaaaatttatattttagactatatatctaaggtggttaacactcaaactattatatagggtggcaaaatggtgtgcatcttca |
14106451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 28 - 126
Target Start/End: Original strand, 13474180 - 13474278
Alignment:
| Q |
28 |
ttatctttcatgatattgtatttcaagtttcaacttttttaaaattttatattttagactttatatctaaagtggttaatacttaaactattatatagg |
126 |
Q |
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| T |
13474180 |
ttatctttcatgatattgtgtttcaagttacaagttttctaggaatttatattttggactttatatctaatgaccttaacacttaaactattatatagg |
13474278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 118
Target Start/End: Complemental strand, 13910663 - 13910619
Alignment:
| Q |
74 |
ttatattttagactttatatctaaagtggttaatacttaaactat |
118 |
Q |
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| T |
13910663 |
ttatattttagactttatatctaaagtggttaacacttaaactat |
13910619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 14109307 - 14109243
Alignment:
| Q |
54 |
gtttcaacttttttaaaattttatattttagactttatatctaaagtggttaatacttaaactat |
118 |
Q |
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| T |
14109307 |
gtttcaagttttctaaaaatttatattttagactttatatataaagaggttaacacttaaactat |
14109243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 214 - 283
Target Start/End: Complemental strand, 14106399 - 14106330
Alignment:
| Q |
214 |
gaagataaatagtttctcctctttattgaaggctttgtgaattatttcccttgtaactctaggaagatga |
283 |
Q |
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| T |
14106399 |
gaagatgaatggtttctcctcttttatgaatgttttgtgaattattttcattgtaactctaggaagatga |
14106330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 219 - 284
Target Start/End: Original strand, 13863775 - 13863840
Alignment:
| Q |
219 |
taaatagtttctcctctttattgaaggctttgtgaattatttcccttgtaactctaggaagatgat |
284 |
Q |
| |
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| T |
13863775 |
taaatggtttctcctcttttatgaatgttttgtgaattatttgcattgtaactctagtaagatgat |
13863840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 48 - 116
Target Start/End: Original strand, 13894205 - 13894274
Alignment:
| Q |
48 |
tttcaagtttcaacttttttaaaattttatattttagactttat-atctaaagtggttaatacttaaact |
116 |
Q |
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| T |
13894205 |
tttcaagtttcaacattttttataattcatattttagactttataatctaaagtggttaagaattaaact |
13894274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 126
Target Start/End: Complemental strand, 14083557 - 14083495
Alignment:
| Q |
62 |
ttttttaaaattttatattttagactttatatctaaagtggttaatacttaaactattatatagg |
126 |
Q |
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|||| ||||| || |||||||||| |||||||||||| |||||| ||||||||||||||||||| |
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| T |
14083557 |
ttttctaaaaattaatattttaga--ttatatctaaagaggttaacacttaaactattatatagg |
14083495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 97
Target Start/End: Complemental strand, 14021575 - 14021506
Alignment:
| Q |
28 |
ttatctttcatgatattgtatttcaagtttcaacttttttaaaattttatattttagactttatatctaa |
97 |
Q |
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| T |
14021575 |
ttatctttgatgatattatgtttcaagttacaagttttctaataatttgtatttcagactttatatctaa |
14021506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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