View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8899_low_81 (Length: 289)
Name: NF8899_low_81
Description: NF8899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8899_low_81 |
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Alignment Details
Target: chr7 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 266
Target Start/End: Complemental strand, 43396720 - 43396456
Alignment:
| Q |
1 |
tggttaatgtttattctaaatgtgatttggtggctaagaggaggatgtgggaggcgttagtggaggagcgtgctaatagaggtgaaggggagtggtgtat |
100 |
Q |
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| T |
43396720 |
tggttaatgtttattctaaatgtgatttggtggctaagag-aggatgtgggaggcgttagtggaggagcgtgctaatagaggtgaaggggcgtggtgtat |
43396622 |
T |
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| Q |
101 |
tcttggagattttaatgtggtgtgccggagagatgaaagaaggggaattaatgaagaaacttcaagtggtcaattattggagatgtatctttttaataat |
200 |
Q |
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| T |
43396621 |
tcttggagattttaatgtggtgtgccggagagatgaaagaaggggaattaatgaagaaacttcaagtggtcaattattggagatgtatctttttaataat |
43396522 |
T |
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| Q |
201 |
tttattggtgagatggaattggaagatcttgctccttcccgtgtgatgtcaacaattatatgcacg |
266 |
Q |
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| T |
43396521 |
tttattggtgagatggaattggaagatctcgctccttcccgtgtgatgtcaacaactatatgcacg |
43396456 |
T |
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Back To:
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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 6 - 53
Target Start/End: Complemental strand, 8507686 - 8507639
Alignment:
| Q |
6 |
aatgtttattctaaatgtgatttggtggctaagaggaggatgtgggag |
53 |
Q |
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| T |
8507686 |
aatgtgtattctaagtgtgatttggtggctaaaaggaggttgtgggag |
8507639 |
T |
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