View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8899_low_86 (Length: 279)
Name: NF8899_low_86
Description: NF8899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8899_low_86 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 4314852 - 4314594
Alignment:
| Q |
1 |
tgtgtttctgatcatttcaatgaattcaaggttacaatggcaatcatggaggcaattactagaagtgcatgtcatataaataatatagagttgcttcatc |
100 |
Q |
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|||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4314852 |
tgtgtttctgatcatttcaatgaactcaaggttacaaaggcaatcatggaggcaattactagaagtgcatgtcatataaataatatagagttgcttcatc |
4314753 |
T |
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| Q |
101 |
tagatttgaaggaaaaactggctggaaagaagttcttaattgttttggatgatgtttggaccgaggattatgacgcttggaattcacttttaagacctct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4314752 |
tagatttgaaggaaaaactggctggaaagaagttcttaattgttttggatgatgtttggaccgaggattatgacgcttggaattcacttttaagacctct |
4314653 |
T |
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| Q |
201 |
tcatgatggcaccaggggaagtaaaattcttgtaacaacccgaagtaaaaaagttgctt |
259 |
Q |
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| T |
4314652 |
tcatgatggcaccaggggaagtaaaattcttgtaacaacccgaagtaaaaaagttgctt |
4314594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 4305990 - 4305723
Alignment:
| Q |
1 |
tgtgtttctgatcatttcaatgaattcaaggttacaatggcaatcatggaggcaattactagaagtgcatgtcatataaataatatagagttgcttcatc |
100 |
Q |
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|||||||| || |||||| |||||||||| ||||||| |||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
4305990 |
tgtgtttccgaccatttcgatgaattcaaagttacaaaggcaatcatggaggcagttactagaagtgcttgtaatataaataatatagagttgcttcatc |
4305891 |
T |
|
| Q |
101 |
tagatttgaaggaaaaactggctggaaagaagttcttaattgttttggatgatgtttggaccgaggattatgacgcttggaattcacttttaagacctct |
200 |
Q |
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| T |
4305890 |
tagatttgaaggaaaaactggccggaaagaagttcttaattgttttggatgacgtttggactgaggattatgatgcttggaaatcccttttaaggcctct |
4305791 |
T |
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| Q |
201 |
tcatgatggcaccaggggaagtaaaattcttgtaacaacccgaagtaaaaaagttgcttctctgctac |
268 |
Q |
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| T |
4305790 |
tcagtacagtgacaaaggaagtaaaattcttgtaacaacccgtattaaaaaagttgcttctatgctac |
4305723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 88 - 261
Target Start/End: Original strand, 4253720 - 4253893
Alignment:
| Q |
88 |
gagttgcttcatctagatttgaaggaaaaactggctggaaagaagttcttaattgttttggatgatgtttggaccgaggattatgacgcttggaattcac |
187 |
Q |
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||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||| |||||||| | |
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| T |
4253720 |
gagttgcttcatcgtgatttgaaggaaaaactgactggaaaaaagttcttaattgttttggatgatgtatggaccgaggattatgacagctggaattctc |
4253819 |
T |
|
| Q |
188 |
ttttaagacctcttcatgatggcaccaggggaagtaaaattcttgtaacaacccgaagtaaaaaagttgcttct |
261 |
Q |
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| T |
4253820 |
ttttaaggcctcttcaatacggggctaagggaaataaaattcttgtaacaactcgtattgaaaaagttgcttct |
4253893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 76 - 261
Target Start/End: Original strand, 4246590 - 4246775
Alignment:
| Q |
76 |
ataaataatatagagttgcttcatctagatttgaaggaaaaactggctggaaagaagttcttaattgttttggatgatgtttggaccgaggattatgacg |
175 |
Q |
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|||||||| | |||||| |||||| |||||||||||||||||| ||||||| |||||||| ||||||||||| |||||||||| | |||||||| || |
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| T |
4246590 |
ataaataacaaagagttacttcattgtgatttgaaggaaaaactgactggaaaaaagttcttgattgttttggacgatgtttggatcaaggattataaca |
4246689 |
T |
|
| Q |
176 |
cttggaattcacttttaagacctcttcatgatggcaccaggggaagtaaaattcttgtaacaacccgaagtaaaaaagttgcttct |
261 |
Q |
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| T |
4246690 |
gttggaattctcttatgatgcctcttcaatacggagctaagggaagcaaaattcttgtaacaacgcgtagtgataaagttgcttct |
4246775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 41933077 - 41933337
Alignment:
| Q |
1 |
tgtgtttctgatcatttcaatgaattcaaggttacaatggcaatcatggaggcaattactagaagtgcatgtcatataaataatatagagttgcttcatc |
100 |
Q |
| |
|
||||||||||| |||||| |||||||||||||||||| |||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||| |
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| T |
41933077 |
tgtgtttctgaccatttcgatgaattcaaggttacaaaggcaatcatggaggcagttactagaagtgcttgtaatataaataatatagagttgcttcatc |
41933176 |
T |
|
| Q |
101 |
tagatttgaaggaaaaactggctggaaagaagttcttaattgttttggatgatgtttggaccgaggattatgacgcttggaattcacttttaagacctct |
200 |
Q |
| |
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|||||||||||||||||||| | ||||||||||||||||||||||| |||||| | ||||||||||||||||| ||||||||||| |||||||| ||||| |
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| T |
41933177 |
tagatttgaaggaaaaactgtccggaaagaagttcttaattgttttagatgatttctggaccgaggattatgatgcttggaattctcttttaaggcctct |
41933276 |
T |
|
| Q |
201 |
tcatgatggcaccaggggaagtaaaattcttgtaacaacccgaagtaaaaaagttgcttct |
261 |
Q |
| |
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||| |||| |||| |||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
41933277 |
tcaatatggtaccaagggaagtaaaattcttgtaacaacccatattaaaaaagttgcttct |
41933337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 95 - 240
Target Start/End: Complemental strand, 34802834 - 34802689
Alignment:
| Q |
95 |
ttcatctagatttgaaggaaaaactggctggaaagaagttcttaattgttttggatgatgtttggaccgaggattatgacgcttggaattcacttttaag |
194 |
Q |
| |
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|||||| |||||||||||| || |||| |||||||||||||||||||| ||||||||||| ||||| |||||||||||| ||||||| ||| |||| |
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| T |
34802834 |
ttcatcaagatttgaaggagaagttggcgggaaagaagttcttaattgtattggatgatgtctggactgaggattatgacagttggaatattcttataag |
34802735 |
T |
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| Q |
195 |
acctcttcatgatggcaccaggggaagtaaaattcttgtaacaacc |
240 |
Q |
| |
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||| |||| || || | |||||||||||||||||||||||| |
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| T |
34802734 |
gccttttcaatgcggaactaaaggaagtaaaattcttgtaacaacc |
34802689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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