View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8899_low_89 (Length: 259)
Name: NF8899_low_89
Description: NF8899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8899_low_89 |
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| [»] scaffold0043 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 19 - 192
Target Start/End: Complemental strand, 24283424 - 24283251
Alignment:
| Q |
19 |
ctccaagtcttgatgtgcaactatggcaagtagcaccctgttcgaagtgtgtctgacttctggtgagagcatctcattatagtccactccctcttttcga |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
24283424 |
ctccaagtcttgatgtgcaactatggcaagtagcaccctgattgaagtgtgtctgactactggtgagagtatctcattatagtccactccctcttttcga |
24283325 |
T |
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| Q |
119 |
ctaaaacctctagcagctaaccgagttttatatttgatcccctcaactggtgacaacctttccttcttcttgaa |
192 |
Q |
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|| |||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
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| T |
24283324 |
ctgaaacctctagcaactaaccgagttttatatttgatcccctcagctggtgacaacatttccttcttcttgaa |
24283251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 192
Target Start/End: Complemental strand, 80846 - 80673
Alignment:
| Q |
19 |
ctccaagtcttgatgtgcaactatggcaagtagcaccctgttcgaagtgtgtctgacttctggtgagagcatctcattatagtccactccctcttttcga |
118 |
Q |
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||||||||| |||||||||||||| |||||||| ||||| | ||| ||||||||||| |||||||| |||||||||||| | ||||| ||| || |
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| T |
80846 |
ctccaagtcctgatgtgcaactataacaagtagccccctgatggaaatgtgtctgactattggtgagaatatctcattatagagaattccctttttctga |
80747 |
T |
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| Q |
119 |
ctaaaacctctagcagctaaccgagttttatatttgatcccctcaactggtgacaacctttccttcttcttgaa |
192 |
Q |
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|| ||| || ||||| ||||||||| |||||| |||||||||||| ||| |||||||| ||||||||||||||| |
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| T |
80746 |
ctgaaagctttagcaactaaccgagctttatacttgatcccctcagctgatgacaacccttccttcttcttgaa |
80673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 192
Target Start/End: Complemental strand, 84230 - 84058
Alignment:
| Q |
19 |
ctccaagtcttgatgtgcaactatggcaagtagcaccctgttcgaagtgtgtctgacttctggtgagagcatctcattatagtccactccctcttttcga |
118 |
Q |
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||||||||| |||||||| |||| |||||||| |||| | ||| ||||||||||| |||||||| |||||| ||||| | ||||| ||| || |
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| T |
84230 |
ctccaagtcctgatgtgccactaaaacaagtagccccctatg-gaaatgtgtctgactattggtgagaatatctcaatatagagaattccctttttctga |
84132 |
T |
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| Q |
119 |
ctaaaacctctagcagctaaccgagttttatatttgatcccctcaactggtgacaacctttccttcttcttgaa |
192 |
Q |
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|| |||||| ||||| |||||||| |||||| |||||||||||| || |||||||| ||||||||||||||| |
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| T |
84131 |
ctgaaacctttagcaactaaccgaactttatacttgatcccctcagttgatgacaacccttccttcttcttgaa |
84058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 19 - 192
Target Start/End: Complemental strand, 18727674 - 18727501
Alignment:
| Q |
19 |
ctccaagtcttgatgtgcaactatggcaagtagcaccctgttcgaagtgtgtctgacttctggtgagagcatctcattatagtccactccctcttttcga |
118 |
Q |
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||||||||| |||||||||||||| |||||||| ||||| | ||| ||||||||||| |||||||| |||||||||||| | ||||| ||| || |
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| T |
18727674 |
ctccaagtcctgatgtgcaactataacaagtagccccctgatggaaatgtgtctgactattggtgagaatatctcattatagagaattccctttttctga |
18727575 |
T |
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| Q |
119 |
ctaaaacctctagcagctaaccgagttttatatttgatcccctcaactggtgacaacctttccttcttcttgaa |
192 |
Q |
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|| ||| || ||||| ||||||||| |||||| |||||||||||| ||| |||||||| ||||||||||||||| |
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| T |
18727574 |
ctgaaagctttagcaactaaccgagctttatacttgatcccctcagctgatgacaacccttccttcttcttgaa |
18727501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 192
Target Start/End: Original strand, 27366962 - 27367135
Alignment:
| Q |
19 |
ctccaagtcttgatgtgcaactatggcaagtagcaccctgttcgaagtgtgtctgacttctggtgagagcatctcattatagtccactccctcttttcga |
118 |
Q |
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||||||||| |||||||||||||| |||||||| |||| | ||| ||||||||||| |||||||| |||||||||||| | ||||| ||| || |
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| T |
27366962 |
ctccaagtcctgatgtgcaactataacaagtagctccctaatggaaatgtgtctgactattggtgagaatatctcattatagagaattccctttttctga |
27367061 |
T |
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| Q |
119 |
ctaaaacctctagcagctaaccgagttttatatttgatcccctcaactggtgacaacctttccttcttcttgaa |
192 |
Q |
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|| |||||| ||| | ||||||||| |||||| |||||||||| | ||| |||| ||| ||||||||||||||| |
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| T |
27367062 |
ctgaaacctttagtaactaaccgagctttatacttgatccccttagctgttgacgacccttccttcttcttgaa |
27367135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 29 - 192
Target Start/End: Original strand, 27337564 - 27337727
Alignment:
| Q |
29 |
tgatgtgcaactatggcaagtagcaccctgttcgaagtgtgtctgacttctggtgagagcatctcattatagtccactccctcttttcgactaaaacctc |
128 |
Q |
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|||||||||||||| |||||||| ||||| | ||| ||||||||||| |||||||| |||||| ||||| | ||||| ||| |||| |||||| |
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| T |
27337564 |
tgatgtgcaactataacaagtagccccctgatggaaatgtgtctgactattggtgagaatatctcaatatagagaattccctttttctgactgaaacctt |
27337663 |
T |
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| Q |
129 |
tagcagctaaccgagttttatatttgatcccctcaactggtgacaacctttccttcttcttgaa |
192 |
Q |
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|| || ||||||||| |||||| |||||||| ||| ||| |||||||| ||||||||||||||| |
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| T |
27337664 |
tatcaactaaccgagctttatacttgatcccatcagctgatgacaacccttccttcttcttgaa |
27337727 |
T |
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