View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8899_low_92 (Length: 254)
Name: NF8899_low_92
Description: NF8899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8899_low_92 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 13 - 237
Target Start/End: Complemental strand, 27138402 - 27138178
Alignment:
| Q |
13 |
aagtaaagtataaaactcagaagatgaaacaaagtattgtcattgcatactgaaatggcatgtcccaggatgaaagttatggtggtgtggaccttcatat |
112 |
Q |
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| T |
27138402 |
aagtaaagtataaaactcagaagacgaaacaaagtattgtcattgcatactgaaatggcatgtcccaggatgaaagttatggtggtgtggaccttcatat |
27138303 |
T |
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| Q |
113 |
ttgaaattaacttaatgaagcattgcaa-ttaaatgaaccaaagctcaacaattgaggaaaaagcacaacaacactacatgaacatgaaaagccacaatt |
211 |
Q |
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| T |
27138302 |
ttgaaattaacttaatgaagcagtgcaactaaaatgaaccaaagctcaacaattgaggaaaaagcacaacaacactacatgaacatgaaaagccacaatt |
27138203 |
T |
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| Q |
212 |
cgtgcccttatggaaaacttacacaa |
237 |
Q |
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|||| |||| |||||||||||||||| |
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| T |
27138202 |
cgtgtcctt-tggaaaacttacacaa |
27138178 |
T |
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