View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8900_high_11 (Length: 381)
Name: NF8900_high_11
Description: NF8900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8900_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 14 - 364
Target Start/End: Complemental strand, 39474231 - 39473881
Alignment:
| Q |
14 |
cagagataacttcaatgcatatagtgcatcttctgtaataaacatgaagtttataaacattagtctgagattcaaaactcactttcagcatcaaccaaat |
113 |
Q |
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| T |
39474231 |
cagagataacttcaatgcatatagtgcatcttctgtaataaacatgaagtttataaacattagtctgagattcaaaactcactttcagcatcaaccaaat |
39474132 |
T |
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| Q |
114 |
caaaaaagcagatatgtttaaaatcacaccattttctactgcaatctagtaaaaatatgaaaacaggtcatcatcagattctattagaaaacactcttat |
213 |
Q |
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| T |
39474131 |
caaaagagcagatatgtttaaaatcacaccattttctactgcaatctagtaaaaatatgaaaacaggtcatcatcagattctattagaaaacactcttat |
39474032 |
T |
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| Q |
214 |
caatatatttccctataccagtggtaagagcttagtcttgtaactttacggtacagagttcaaatcctcccaaggacgttgtaaaatgaccatcagtatc |
313 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
39474031 |
caatatatttccctacaccagtggtaagagcttagtcttgtaactttacggtacagagttcaaatcctcccaaggacgttgtaaaatgaccattagtatc |
39473932 |
T |
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| Q |
314 |
actttaattaataaagaggaaattaacttgttgagaagcaaaataacaaaa |
364 |
Q |
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| T |
39473931 |
actttaattaataaagaggaaattaactagttgagaagcaaaataacaaaa |
39473881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 232 - 326
Target Start/End: Complemental strand, 253128 - 253035
Alignment:
| Q |
232 |
cagtggtaagagcttagtcttgtaactttacggtacagagttcaaatcctcccaaggac-gttgtaaaatgaccatcagtatcactttaattaata |
326 |
Q |
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||||||||||||||||| |||||||| ||| |||||| ||||||||||| ||| |||| ||||||||||| | || |||| |||||||||||||| |
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| T |
253128 |
cagtggtaagagcttagccttgtaaccttaaggtacaaagttcaaatcc-cccggggacggttgtaaaatggcaat-agtaccactttaattaata |
253035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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