View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8900_high_14 (Length: 340)
Name: NF8900_high_14
Description: NF8900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8900_high_14 |
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| [»] scaffold0074 (1 HSPs) |
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| [»] scaffold0007 (1 HSPs) |
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| [»] scaffold0264 (1 HSPs) |
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Alignment Details
Target: scaffold0074 (Bit Score: 314; Significance: 1e-177; HSPs: 1)
Name: scaffold0074
Description:
Target: scaffold0074; HSP #1
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 47281 - 46961
Alignment:
| Q |
1 |
cttttgatgacaatgaagagaggagtgtcttggtattgatttggtaggtgctattgcttgtggtaccattggtggaacaataggaatgcagaaaagtaga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47281 |
cttttgatgacaatgaagagaggagtgtcttggtattgatttggtaggtgctattgcttgtggtaccattggtggaacaataggaatgcagaaaagtaga |
47182 |
T |
|
| Q |
101 |
gtcttgtgcctcgatagttgcaaaacaaaggaatcgaataaggattgagagaaagagaattttagagtaagccatggattttgatgagagaatgtgtttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47181 |
gtcttgtgcctcgatagttgcaaaacaaaggaatcgaataaggattgagagaaagagaattttagagtaagccatggattttgatgagagaatgtgtttg |
47082 |
T |
|
| Q |
201 |
tttgatttgcaatgacagaggcaatgtatgtcaacaaagtttaattaccgaggtatatataatcttatatatatccagggccggtcctaagttttttcat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
47081 |
tttgatttgcaatgacagaggcaatgtatgtcaacaaagtttaattaccgaggtatatataatcttatatatatcca-ggccggtcctaagttttttcat |
46983 |
T |
|
| Q |
301 |
ccccaggacgaaacaataaaat |
322 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
46982 |
ccccaggacgaaacaataaaat |
46961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 5 - 322
Target Start/End: Original strand, 18997511 - 18997824
Alignment:
| Q |
5 |
tgatgacaatgaagagaggagtgtcttggtattgatttggtaggtgctattgcttgtggtaccattggtggaacaataggaatgcagaaaagtagagtct |
104 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||| ||||||| |||||| ||||||||||||||| |
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| T |
18997511 |
tgatgacaatgaagagaggagtgtcctggtattgatttggtaggtgctattggttgtggtaagattggaggaacaaaaggaatacagaaaagtagagtcc |
18997610 |
T |
|
| Q |
105 |
tgtgcctcgatagttgcaaaacaaaggaatcgaataaggattgagagaaagagaattttagagtaagccatggattttgatgagagaatgtgtttgtttg |
204 |
Q |
| |
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| ||||| ||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
18997611 |
tctgccttgatagttgcaaaacagaggaatcgaataaggattgagaaaaagagaattttagagtaagccatggattttgataagagaatgtgtttgtttg |
18997710 |
T |
|
| Q |
205 |
atttgcaatgacagaggcaatgtatgtcaacaaagtttaattaccgaggtatatataatcttatatatatccagggccggtcctaagttttttcatcccc |
304 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||| | ||||||||||||| |||||||||||||| |||||| |
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|
| T |
18997711 |
atttgcaatgacagaggcaatgtatgtcagcaaagtttaattacccaggcatatataatat----tatatccagggcccgtcctaagttttttgatcccc |
18997806 |
T |
|
| Q |
305 |
aggacgaaacaataaaat |
322 |
Q |
| |
|
| |||||||||||||| |
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|
| T |
18997807 |
caggcgaaacaataaaat |
18997824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 20128424 - 20128606
Alignment:
| Q |
1 |
cttttgatgacaatgaagagaggagtgtcttggtattgatttggtaggtgctattgcttgtggtaccattggtggaacaataggaatgcagaaaagtaga |
100 |
Q |
| |
|
|||||||||| || ||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||| ||||||| ||||| |||||||||||| |
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| T |
20128424 |
cttttgatgataaagaagagaggagtgtcctggtattgatttggtaggtgctattggttgtggtacgattggaggaacaaatggaatacagaaaagtaga |
20128523 |
T |
|
| Q |
101 |
gtcttgtgcctcgatagttgcaaaacaaaggaatcgaataaggattgagagaaagagaattttagagtaagccatggattttg |
183 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
20128524 |
gtcttgtgccttgatagttgcaaaacaaaggaatcgaataaggattaagaaaaagagaattttagagtaagccatggattttg |
20128606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 22204446 - 22204264
Alignment:
| Q |
1 |
cttttgatgacaatgaagagaggagtgtcttggtattgatttggtaggtgctattgcttgtggtaccattggtggaacaataggaatgcagaaaagtaga |
100 |
Q |
| |
|
|||||||||| || ||||||||||||||| |||||||||||||||||||||||||| ||||||||| ||||| ||||||| ||||| |||||||||||| |
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|
| T |
22204446 |
cttttgatgataaagaagagaggagtgtcctggtattgatttggtaggtgctattggttgtggtacgattggaggaacaaatggaatacagaaaagtaga |
22204347 |
T |
|
| Q |
101 |
gtcttgtgcctcgatagttgcaaaacaaaggaatcgaataaggattgagagaaagagaattttagagtaagccatggattttg |
183 |
Q |
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|
||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
22204346 |
gtcttgtgccttgatagttgcaaaacaaaggaatcgaataaggattaagaaaaagagaattttagagtaagccatggattttg |
22204264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 20086711 - 20086878
Alignment:
| Q |
1 |
cttttgatgacaatgaagagaggagtgtcttggtattgatttggtaggtgctattgcttgtggtaccattggtggaacaataggaatgcagaaaagtaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| ||||||| ||||||| |||| |
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| T |
20086711 |
cttttgatgacaatgaagagaggagtgtcctggtattgatttggtaggtgctattggttgtggtcccattggaggaacaaa---------------taga |
20086795 |
T |
|
| Q |
101 |
gtcttgtgcctcgatagttgcaaaacaaaggaatcgaataaggattgagagaaagagaattttagagtaagccatggattttg |
183 |
Q |
| |
|
||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| |
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| T |
20086796 |
gtcctgtgccttgatagttgcaaaacaaaggaatcgaataaggattgagaaaaagagaattctagagtaagccatggattttg |
20086878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 24384658 - 24384560
Alignment:
| Q |
1 |
cttttgatgacaatgaagagaggagtgtcttggtattgatttggtaggtgctattgcttgtggtaccattggtggaacaataggaatgcagaaaagtag |
99 |
Q |
| |
|
||||||||||||| ||||||| ||| ||| || ||| ||||| ||||||||||| |||||||| | |||||||||||| ||||| || |||||||| |
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|
| T |
24384658 |
cttttgatgacaaagaagagaagagagtcatgagattagtttggaaggtgctattggctgtggtacgaatggtggaacaattggaatacataaaagtag |
24384560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 4793 - 4476
Alignment:
| Q |
1 |
cttttgatgacaatgaagagaggagtgtcttggtattgatttggtaggtgctattgcttgtggtaccattggtggaacaataggaatgcagaaaagtaga |
100 |
Q |
| |
|
||||||||||||| ||||| ||||| ||| || ||| ||||| ||||||||||| |||||||| |||||||||||||| ||||| |||||||||||| |
|
|
| T |
4793 |
cttttgatgacaaggaagaaaggagggtcatgagattagtttggaaggtgctattggctgtggtacgattggtggaacaattggaatacagaaaagtaga |
4694 |
T |
|
| Q |
101 |
gtcttgtgcctcgatagttgcaaaacaaaggaatcgaataaggattgagagaaagagaattttagagtaagccatggattttgatgagagaatgtgtttg |
200 |
Q |
| |
|
||| ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4693 |
gtcctgtgccttgatagttgcaaaacaaaagaatcgaataaggattgagagaaagagaattttagagtaagccatggattttgatgagagaatgtgtttg |
4594 |
T |
|
| Q |
201 |
tttgatttgcaatgacagaggcaatgtatgtcaacaaagtttaattaccgaggtatatataatcttatatatatccagggccggtcctaagttttttcat |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||| || |
|
|
| T |
4593 |
tttgatttgcaatgacagaggcaatgtatgccaacaaagtttaattacccaggtatatataatat----tatatccagggccggtcctaagttttttgat |
4498 |
T |
|
| Q |
301 |
ccccaggacgaaacaataaaat |
322 |
Q |
| |
|
||| ||||||||||||||| |
|
|
| T |
4497 |
tcccttaacgaaacaataaaat |
4476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0264 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: scaffold0264
Description:
Target: scaffold0264; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 16660 - 16827
Alignment:
| Q |
1 |
cttttgatgacaatgaagagaggagtgtcttggtattgatttggtaggtgctattgcttgtggtaccattggtggaacaataggaatgcagaaaagtaga |
100 |
Q |
| |
|
|||||||||| || ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||| |||| |
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|
| T |
16660 |
cttttgatgataaggaagagaggagtgtcctggtattgatttggtaggtgctattggttgtggtaccattggaggaacaaa---------------taga |
16744 |
T |
|
| Q |
101 |
gtcttgtgcctcgatagttgcaaaacaaaggaatcgaataaggattgagagaaagagaattttagagtaagccatggattttg |
183 |
Q |
| |
|
||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||||||| |
|
|
| T |
16745 |
gtcctgtgccttgatagttgcaaaacaaaggaatcgaataaggattgagaaaaagataattttaaagtaagccatggattttg |
16827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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