View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8900_high_15 (Length: 325)
Name: NF8900_high_15
Description: NF8900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8900_high_15 |
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Alignment Details
Target: chr2 (Bit Score: 204; Significance: 1e-111; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 18513314 - 18513071
Alignment:
| Q |
1 |
tgagaccaccatctttagatgtagtgattccaagcaaagaagagctgtctatatgcttccaattctcccaattttcattcctaaccattcttttaatcca |
100 |
Q |
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| T |
18513314 |
tgagaccaccatctttagatgtagtgattccaagcaaagaagagctatctatatgcttccaattctcccaattttcattcctaaccattcttttaatcca |
18513215 |
T |
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| Q |
101 |
accatctctcgtagctgtatatagagcaccatctttatccacacaaacatcttctggttgtttcagaaatccttctccgagtttaatcacattctatcat |
200 |
Q |
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| T |
18513214 |
accatctcttgtagctgtatatagaacaccatttttatcaacacaaacatcttctggttgtttcagaaatccttctccgagtttaatcacattctgttat |
18513115 |
T |
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| Q |
201 |
gttatggaaacattaatagacaattaaatacatatgatattgaa |
244 |
Q |
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| T |
18513114 |
gttatggaaacattaatagataattaaatacatattattttgaa |
18513071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 18486965 - 18486722
Alignment:
| Q |
1 |
tgagaccaccatctttagatgtagtgattccaagcaaagaagagctgtctatatgcttccaattctcccaattttcattcctaaccattcttttaatcca |
100 |
Q |
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| T |
18486965 |
tgagaccaccatctttagatgttgtgattccaagcaaagaagagctatctatatgcttccaattctcccaatttccattcctaaccattcttttaatcca |
18486866 |
T |
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| Q |
101 |
accatctctcgtagctgtatatagagcaccatctttatccacacaaacatcttctggttgtttcagaaatccttctccgagtttaatcacattctatcat |
200 |
Q |
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| T |
18486865 |
accatctcttgttgctgtatataaaataccatctttatcaacacaaacatcttctggttgtttcagaaatccttctccgagtttaatcacattctgttat |
18486766 |
T |
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| Q |
201 |
gttatggaaacattaatagacaattaaatacatatgatattgaa |
244 |
Q |
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| T |
18486765 |
gttatggaaacattaatagacaattaaatacatattattttgaa |
18486722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 18506816 - 18506620
Alignment:
| Q |
1 |
tgagaccaccatctttagatgtagtgattccaagcaaagaagagctgtctatatgcttccaattctcccaattttcattcctaaccattcttttaatcca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18506816 |
tgagaccaccatctttagatgtagtgattccaagcaaagaagagctatctatatgcttccaattctcccaattttcattcctaaccattcttttaatcca |
18506717 |
T |
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| Q |
101 |
accatctctcgtagctgtatatagagcaccatctttatccacacaaacatcttctggttgtttcagaaatccttctccgagtttaatcacattctat |
197 |
Q |
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| T |
18506716 |
accatctcttgtagctgtatatagaacaccatctttatcaacacaaacatcttctggttgtttcagaaatccttctccaagtttaatcacactctat |
18506620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 271 - 312
Target Start/End: Complemental strand, 18486715 - 18486674
Alignment:
| Q |
271 |
acaaatgttgataaaattttcacctgtaattggttgtttttg |
312 |
Q |
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|||||| |||||||||| |||||||||||||||||||||||| |
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| T |
18486715 |
acaaatattgataaaatattcacctgtaattggttgtttttg |
18486674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 272 - 312
Target Start/End: Complemental strand, 18513063 - 18513023
Alignment:
| Q |
272 |
caaatgttgataaaattttcacctgtaattggttgtttttg |
312 |
Q |
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| T |
18513063 |
caaatattgataaaatattcacctgtaattggttgtttttg |
18513023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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