View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8900_high_28 (Length: 240)
Name: NF8900_high_28
Description: NF8900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8900_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 239
Target Start/End: Complemental strand, 32607135 - 32606914
Alignment:
| Q |
18 |
tgagtgtcaccaatcttgtgaagtcatcatacaccttttaatcattcttcatttccatcaatttttactatcttctgaaagcttgaagttttaccttctt |
117 |
Q |
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| T |
32607135 |
tgagtgtccccaatcttgtgaagtcatcatacaccttttaatcattcttcatttccatcaacttttactatcttctgaaagcttgaagttttaccttctt |
32607036 |
T |
|
| Q |
118 |
gtctttttcatcacctccatatagcttttcaataagatatcctaagcattcttggaatttgatgattttgcagttttctcaaatacctttacatcaacac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
32607035 |
gtctttttcatcacctccatatagcttttcaataagatatcctaagcattcttggaatttgatgattttgcaattttgtcaaatacctttacatcaacac |
32606936 |
T |
|
| Q |
218 |
attgatgaataagaaataaagg |
239 |
Q |
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|||||||||||||||||||||| |
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| T |
32606935 |
attgatgaataagaaataaagg |
32606914 |
T |
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