View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8900_high_29 (Length: 217)
Name: NF8900_high_29
Description: NF8900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8900_high_29 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 14 - 217
Target Start/End: Complemental strand, 2886740 - 2886537
Alignment:
| Q |
14 |
acctgtggcatgtcaacagaatatacaacatcgtcaaaggctatagaatgtggttcaaaaggaagaaccattcctcttctctctctttggctggggtccg |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
2886740 |
acctgtggcatgtcaacagaatatacaacatcgtcaaaggctatagaatgtggttcaaaaggaagaaccattcctcttctctctctttggctagggtccg |
2886641 |
T |
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| Q |
114 |
caccatttgatcctcctgaacttgctgcataacaattgcaaatatgttaagattctaaagccattatgaggcatgaaagaacatcattatagaaaactga |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2886640 |
caccatttgatcctcctgaacttgctgcataacaattgcaaatatgttaagattctaaagccattatgaggcatgaaagaacatcattatagaaaactga |
2886541 |
T |
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| Q |
214 |
gatc |
217 |
Q |
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|||| |
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| T |
2886540 |
gatc |
2886537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 14 - 182
Target Start/End: Original strand, 2897634 - 2897800
Alignment:
| Q |
14 |
acctgtggcatgtcaacagaatatacaacatcgtcaaaggctatagaatgtggttcaaaaggaagaaccattcctcttctctctctttggctggggtccg |
113 |
Q |
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||||||||||||||||| ||||||||||| | ||||||| |||||||||||||||||||||||||| |||||| ||| ||| ||| | ||||| | | |
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| T |
2897634 |
acctgtggcatgtcaactgaatatacaacttggtcaaagattatagaatgtggttcaaaaggaagaatcattccccttttctttctgttgctggagctca |
2897733 |
T |
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| Q |
114 |
caccatttgatcctcctgaacttgctgcataacaattgcaaa-tatgttaagattctaaagccattatga |
182 |
Q |
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| T |
2897734 |
caacat---attctcctaaactagctgcgtaacaattggaaattttgttaagattctaaagacattatga |
2897800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 87
Target Start/End: Complemental strand, 2876732 - 2876662
Alignment:
| Q |
17 |
tgtggcatgtcaacagaatatacaacatcgtcaaaggctatagaatgtggttcaaaaggaagaaccattcc |
87 |
Q |
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||||||| ||||||||| ||||||| |||||||| | ||||||| |||||||||||| ||||||||||| |
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| T |
2876732 |
tgtggcacgtcaacagagtatacaatttcgtcaaatgtgatagaatatggttcaaaaggtagaaccattcc |
2876662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 8e-20; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 39338032 - 39337959
Alignment:
| Q |
14 |
acctgtggcatgtcaacagaatatacaacatcgtcaaaggctatagaatgtggttcaaaaggaagaaccattcc |
87 |
Q |
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|||||||||||||| ||||||||| ||| || ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
39338032 |
acctgtggcatgtctacagaatatgtaacttcatcaaaggttatagaatgtggttcaaaaggaagaaccattcc |
39337959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 14 - 87
Target Start/End: Original strand, 39564806 - 39564879
Alignment:
| Q |
14 |
acctgtggcatgtcaacagaatatacaacatcgtcaaaggctatagaatgtggttcaaaaggaagaaccattcc |
87 |
Q |
| |
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|||||||||||||| || |||||| ||| || ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
39564806 |
acctgtggcatgtctacggaatatgtaacttcatcaaaggttatagaatgtggttcaaaaggaagaaccattcc |
39564879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 39349209 - 39349136
Alignment:
| Q |
14 |
acctgtggcatgtcaacagaatatacaacatcgtcaaaggctatagaatgtggttcaaaaggaagaaccattcc |
87 |
Q |
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||||| |||||||| | ||||||| ||| || ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
39349209 |
acctgcggcatgtctatagaatatgtaacttcatcaaaggttatagaatgtggttcaaaaggaagaaccattcc |
39349136 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 91
Target Start/End: Complemental strand, 39365682 - 39365605
Alignment:
| Q |
14 |
acctgtggcatgtcaacagaatatacaacatcgtcaaaggctatagaatgtggttcaaaaggaagaaccattcctctt |
91 |
Q |
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|||||||||||||| ||||||||| ||| || ||||||| || |||||||||||||| |||||||||||||||||| |
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| T |
39365682 |
acctgtggcatgtctacagaatatgaaacttcatcaaaggtgattgaatgtggttcaaatggaagaaccattcctctt |
39365605 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 39538588 - 39538665
Alignment:
| Q |
14 |
acctgtggcatgtcaacagaatatacaacatcgtcaaaggctatagaatgtggttcaaaaggaagaaccattcctctt |
91 |
Q |
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|||||||||||||| ||||||||| ||| || ||||||| || |||||||||||||| |||||||||||||||||| |
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| T |
39538588 |
acctgtggcatgtctacagaatatgaaacttcatcaaaggtgattgaatgtggttcaaatggaagaaccattcctctt |
39538665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 39547952 - 39548029
Alignment:
| Q |
14 |
acctgtggcatgtcaacagaatatacaacatcgtcaaaggctatagaatgtggttcaaaaggaagaaccattcctctt |
91 |
Q |
| |
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|||||||||||||| ||||||||| ||| || ||||||| || ||||||||||||||||| ||||||||||||||| |
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| T |
39547952 |
acctgtggcatgtctacagaatatgtaacttcatcaaaggtgattgaatgtggttcaaaagggagaaccattcctctt |
39548029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 39575466 - 39575535
Alignment:
| Q |
20 |
ggcatgtcaacagaatatacaacatcgtcaaaggctatagaatgtggttcaaaaggaagaaccattcctc |
89 |
Q |
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|||||||| ||||||||| || || ||||||| |||||||||| |||||||||||||||||||||||| |
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| T |
39575466 |
ggcatgtcgacagaatatgttacttcatcaaaggttatagaatgttgttcaaaaggaagaaccattcctc |
39575535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 91
Target Start/End: Original strand, 39589697 - 39589774
Alignment:
| Q |
14 |
acctgtggcatgtcaacagaatatacaacatcgtcaaaggctatagaatgtggttcaaaaggaagaaccattcctctt |
91 |
Q |
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|||||||||||||| ||||||||| || || ||||||| | | |||||||||||||||||||||||||||||||| |
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| T |
39589697 |
acctgtggcatgtctacagaatatgttacttcatcaaaggtgacacaatgtggttcaaaaggaagaaccattcctctt |
39589774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 44211408 - 44211476
Alignment:
| Q |
19 |
tggcatgtcaacagaatatacaacatcgtcaaaggctatagaatgtggttcaaaaggaagaaccattcc |
87 |
Q |
| |
|
||||||||||||||| ||||||| ||| ||||| | ||||||||||||||||| |||||||||||||| |
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| T |
44211408 |
tggcatgtcaacagagtatacaatatcatcaaaagtgatagaatgtggttcaaatggaagaaccattcc |
44211476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 44234392 - 44234460
Alignment:
| Q |
19 |
tggcatgtcaacagaatatacaacatcgtcaaaggctatagaatgtggttcaaaaggaagaaccattcc |
87 |
Q |
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||||||||||||||| ||||||| ||| ||||| | ||||||||||||||||| |||||||||||||| |
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| T |
44234392 |
tggcatgtcaacagagtatacaatatcatcaaaagtgatagaatgtggttcaaatggaagaaccattcc |
44234460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 87
Target Start/End: Original strand, 44223570 - 44223638
Alignment:
| Q |
19 |
tggcatgtcaacagaatatacaacatcgtcaaaggctatagaatgtggttcaaaaggaagaaccattcc |
87 |
Q |
| |
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|||||| |||||||| ||||||| ||| ||||| | ||||||||||||||||| |||||||||||||| |
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| T |
44223570 |
tggcatatcaacagagtatacaatatcatcaaaagtgatagaatgtggttcaaatggaagaaccattcc |
44223638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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