View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8900_high_7 (Length: 429)
Name: NF8900_high_7
Description: NF8900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8900_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 11 - 424
Target Start/End: Original strand, 40184962 - 40185370
Alignment:
| Q |
11 |
tttggtggtggttgtgtaaacagcgtcgtagtatatggttggaaaaccggttctctcagtaacgtaaacgagttgcagaggaggtggatcttggtgagtg |
110 |
Q |
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| T |
40184962 |
tttggtggtggttgtgtaaacggcgtcgtagtatatggttggaaaaccggttctctcagtaacgtaaacgagttgaagaggaggtggatcttggtgagtg |
40185061 |
T |
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| Q |
111 |
aggagtttaatggatgtgagattgggaaggaattggccgttaaaattgacggagtgtccgtcagtgagttgtaattcttcttggtggtggtagtgatgat |
210 |
Q |
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| T |
40185062 |
aggagtttaatggatgtgagattgggaaggaattggccgttaaaattgacggagtgtccgtcagtgagttgtaattct---tggtggtggtagtgatgat |
40185158 |
T |
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| Q |
211 |
gaatcgggagggaatagatatcaaaagcgtagtcaggtctgccaagtgtggtgaagatgatgctatcactgctggaagcatcctcttcaactgcctttag |
310 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
40185159 |
gaattgggagggaatagatatcaaaagcgtagtcaggtctgccaagtgtggtgaagatgatgctatcgctgctggaagcatcctcttcaactgcctttag |
40185258 |
T |
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| Q |
311 |
caagggaaacgccagcagctgtagcagcagcaacactatgcataattgacgtgcaatcattgttactaattttgagtgtgtgtggatggagaggtgcaga |
410 |
Q |
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|||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |
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| T |
40185259 |
caagggaaacaccagcaggtgtagcagcagcaacactatgcataattgacgtgcaatcattgttactaattttgagtgtgtgtggatggagagctgc--a |
40185356 |
T |
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| Q |
411 |
gattacagtttatg |
424 |
Q |
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| T |
40185357 |
gattacagtttatg |
40185370 |
T |
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