View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8900_low_13 (Length: 440)
Name: NF8900_low_13
Description: NF8900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8900_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 18 - 436
Target Start/End: Complemental strand, 45641603 - 45641185
Alignment:
| Q |
18 |
aactaaaccattttcattgaacatcccataaattcaccgcaagtgttctcttctcagacataatgccactgaatttcaaaatgagacaggacagaagaaa |
117 |
Q |
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| T |
45641603 |
aactaaaccattttcattgaacatcccataaattcaccgcaagtgttctcttctcagacataatgccactgaatttcaaaatgagacaggacagaacaaa |
45641504 |
T |
|
| Q |
118 |
caccccacaatacagacaaattccatctgaacacaacaaaataaaatcaataatggatatccaaacattactaatcaatcattcaatcaatgattcaata |
217 |
Q |
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| T |
45641503 |
cacccaacaatacagacaaattccatctgaacacaacaaaataaaatcaataatggatatccaaacattactaatcaatcattcaatcaatgattcaata |
45641404 |
T |
|
| Q |
218 |
tgtggattgcattctttggaacaaaaatcattcttctctaataaactcttcaacatagaatgagtaaatttaggatcattagggtcactaccagttgacc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
45641403 |
tgtggattgcattctttggaacaaaaatcattcttctctaataaactcttcaacatagaatgagtaaatttaggatcattagggtcactactagttgacc |
45641304 |
T |
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| Q |
318 |
cattagggttttccaatacatttggacgcgaaaaacaaaacttgcaaccaaatccatttcgagtagtagtactattatgaccctcaccttgaataatcac |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45641303 |
cattagggttttccaatacatttggacgcgaaaaacaaaacttgcaaccaaatccatttcgagtagtagtactattatgaccctcaccttgaataatcac |
45641204 |
T |
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| Q |
418 |
caccttacctctgctactc |
436 |
Q |
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| T |
45641203 |
caccttacctctgctactc |
45641185 |
T |
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