View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8900_low_15 (Length: 432)
Name: NF8900_low_15
Description: NF8900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8900_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 20 - 419
Target Start/End: Complemental strand, 20370847 - 20370449
Alignment:
| Q |
20 |
tcaaagccttttatcaactcccacatactgcaactgttttggaatattagtgaaatagaggcagccgtcgttggtaaaagattaccgcgagtaacataat |
119 |
Q |
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| T |
20370847 |
tcaaagccttttatcaactcc-acatacaacaactgttttggaatattagtgaaatagaggcagccgtcgttggtaaaagattaccgcgagtaacataat |
20370749 |
T |
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| Q |
120 |
tatgtcgccagtggggtaatgttaattgtctccttacgcgtggaaaaccacattaaaaagcacaaccatgatcaaaatgcaggggcgctgaaccttgttt |
219 |
Q |
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| T |
20370748 |
tatgtcgccagtggggtaatgttaattgtttccttacgcgtgaaaaaccacattaaaaagcacaaccatgatcaaaatgcaggggcgctgaaccttgttt |
20370649 |
T |
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| Q |
220 |
ctgcttcagacgtcatcgcgatggctctcagatcgactccatgattgcgataatgaaacccctgtgaatgaaagcaatcaaaacctatacctccttgcca |
319 |
Q |
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| T |
20370648 |
ccgcttcaaacgtcatcgcgatggctctcagaccgaccccatgattgcgataatgaaacccctgtgaatgaaagcaatcaaaacctatacctccttgcca |
20370549 |
T |
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| Q |
320 |
ataattaatttcattttcgtaatcctcaagattccatctttcacaaatatatatcaattcaaaataacnnnnnnntcggatacaagtattcagaataatc |
419 |
Q |
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| T |
20370548 |
ataattaatttcatttttgtaatcctcaagattccatctttcacaaatatatatcaattcaaaataacaaaaaaatcggatacaagtattcaggataatc |
20370449 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 321 - 418
Target Start/End: Complemental strand, 20390443 - 20390346
Alignment:
| Q |
321 |
taattaatttcattttcgtaatcctcaagattccatctttcacaaatatatatcaattcaaaataacnnnnnnntcggatacaagtattcagaataat |
418 |
Q |
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| T |
20390443 |
taattaatttcattttcgtaatcctttagattccatctttcactaatatatatcaattcaaaataacaagaaaatcggatacaactattcacaataat |
20390346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 322 - 373
Target Start/End: Complemental strand, 20377962 - 20377911
Alignment:
| Q |
322 |
aattaatttcattttcgtaatcctcaagattccatctttcacaaatatatat |
373 |
Q |
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| T |
20377962 |
aattaatttcattttggtaatcatcaagattccatctttcactaatatatat |
20377911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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