View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8900_low_19 (Length: 422)
Name: NF8900_low_19
Description: NF8900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8900_low_19 |
 | |
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| [»] chr2 (3 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 374; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 32219253 - 32219674
Alignment:
| Q |
1 |
caacccaaaatgatgacaataatgttcgacattcatctacatctacacatgctccaaataatgatgaggtatgttttccttatattgaagtgtcggctaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
32219253 |
caacccaaaatgatgacaataatgttcgacattcatctacatctacacatgctccaaataatcatgaggtatgttttccttatattgaagtgtcggctaa |
32219352 |
T |
|
| Q |
101 |
ttgttgcagtagagataaacatcagttgaagtaatcaatctataaattatcattttcatattatctgtagacttcatgaggtaggctgcttcagattatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32219353 |
ttgttgcagtagagataaacatcagttgaagtaatcaatctataaattatcattttcatattatctgtagacttcatgaggtaggctgcttcagattatc |
32219452 |
T |
|
| Q |
201 |
attttattattaagttcttgaagttgtgtgtcaatcacttgataaaatacctcaactccaaagttaaaaggagaagtagaaaaaattgattgttttaacc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
32219453 |
attttattattaagttcttgaagttgtgtgtcaatcacttgataaaatacctcaactccaaagtgaaaaagagaagtagaaaaaattgattgttttaacc |
32219552 |
T |
|
| Q |
301 |
tttatttctcttttttcactaaccaccggatgcttcgatttgtttgattctggattagtcagtcatgaagctcacagtgaagactctgaaaggaagccat |
400 |
Q |
| |
|
|||||||||||||||| |||||||||||||| ||||||||| |||||||| |||| ||||| |||||||| |||||||||||||| ||||||||||| || |
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|
| T |
32219553 |
tttatttctcttttttaactaaccaccggatacttcgatttctttgattccggatcagtcaatcatgaagttcacagtgaagactttgaaaggaagcaat |
32219652 |
T |
|
| Q |
401 |
ttcgaaatcagagttcatcctt |
422 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
32219653 |
ttcgaaatcagagttcatcctt |
32219674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 359 - 422
Target Start/End: Complemental strand, 45450719 - 45450656
Alignment:
| Q |
359 |
tcagtcatgaagctcacagtgaagactctgaaaggaagccatttcgaaatcagagttcatcctt |
422 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
45450719 |
tcagtcatgaagctcactgtgaagactttgaaaggaagccatttcgaaatcagagttcatcctt |
45450656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 206 - 255
Target Start/End: Complemental strand, 1979410 - 1979361
Alignment:
| Q |
206 |
attattaagttcttgaagttgtgtgtcaatcacttgataaaatacctcaa |
255 |
Q |
| |
|
||||||||| |||||||||||| | |||||||| |||||||||||||||| |
|
|
| T |
1979410 |
attattaagctcttgaagttgtctatcaatcacatgataaaatacctcaa |
1979361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 24245101 - 24245507
Alignment:
| Q |
1 |
caacccaaaatgatgacaataatgttcgacattcatctacatctacacatgctccaaataatgatgaggtatgttttccttatattgaagtgtcggctaa |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
24245101 |
caacccgaaatgatgacaataatgttcgacattcatctacatcta---------------atcatgaggtatgttttcggtatattgaagtgtcggctaa |
24245185 |
T |
|
| Q |
101 |
ttgttgcagtagagataaacatcagttgaagtaatcaatctataaattatcattttcatattatctgtagacttcatgaggtaggctgcttcagattatc |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||| |
|
|
| T |
24245186 |
ttgttgcaatagagataaacatcagttggagtaatcaatctataaattatcattttcatattatatgtagacttaatgaggtaggccacttcagattatc |
24245285 |
T |
|
| Q |
201 |
attttattattaagttcttgaagttgtgtgtcaatcacttgataaaatacctcaactccaaagttaaaaggagaagtagaaaaaattgattgttttaacc |
300 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||| |||| ||||||||||||| ||||||||||||| | |
|
|
| T |
24245286 |
attttattattaagttcttgaagttgggtgtcaatcacttgataaaataactgaactccaaagtgaaaaatagaagtagaaaaagttgattgttttaagc |
24245385 |
T |
|
| Q |
301 |
tttatttctcttttttcactaaccaccggatgcttcgatttgtttgattctggattagtcagtcatgaagctcacagtgaagactctgaaaggaagccat |
400 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24245386 |
tttatttctcttttttcactaaccactggatgcttcgatttctttgattctggatcagtcagtcatgaagctcacagtgaagactctgaaaggaagccat |
24245485 |
T |
|
| Q |
401 |
ttcgaaatcagagttcatcctt |
422 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
24245486 |
ttcgaaatcagagttcatcctt |
24245507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 280; Significance: 1e-156; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 11490204 - 11489798
Alignment:
| Q |
1 |
caacccaaaatgatgacaataatgttcgacattcatctacatctacacatgctccaaataatgatgaggtatgttttccttatattgaagtgtcggctaa |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||| | |||||||||||||||||||| |
|
|
| T |
11490204 |
caacccgaaatgatgacaataatgttcgacattcatctacatcta---------------atcatgaggtatgtttttcgtatattgaagtgtcggctaa |
11490120 |
T |
|
| Q |
101 |
ttgttgcagtagagataaacatcagttgaagtaatcaatctataaattatcattttcatattatctgtagacttcatgaggtaggctgcttcagattatc |
200 |
Q |
| |
|
|||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||| |
|
|
| T |
11490119 |
ttgttgcaatagagataaacattagttggagtaatcaatctataaattatcattttcatattatatgtagacttaatgaggtaggccacttcagattatc |
11490020 |
T |
|
| Q |
201 |
attttattattaagttcttgaagttgtgtgtcaatcacttgataaaatacctcaactccaaagttaaaaggagaagtagaaaaaattgattgttttaacc |
300 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||| |||| |||||||| |||| ||||||||||||| | |
|
|
| T |
11490019 |
attttattattaagttcttgaagttgggtgtcaatcacttgataaaataactgaactccaaagtgaaaaatagaagtagtaaaagttgattgttttaagc |
11489920 |
T |
|
| Q |
301 |
tttatttctcttttttcactaaccaccggatgcttcgatttgtttgattctggattagtcagtcatgaagctcacagtgaagactctgaaaggaagccat |
400 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11489919 |
tttatttctcttttttcactaaccactggatgcttcgatttctttgattctggatcagtcagtcatgaagctcacagtgaagactctgaaaggaagccat |
11489820 |
T |
|
| Q |
401 |
ttcgaaatcagagttcatcctt |
422 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
11489819 |
ttcgaaatcagagttcatcctt |
11489798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 406
Target Start/End: Original strand, 13779061 - 13779451
Alignment:
| Q |
1 |
caacccaaaatgatgacaataatgttcgacattcatctacatctacacatgctccaaataatgatgaggtatgttttccttatattgaagtgtcggctaa |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
13779061 |
caacccgaaatgatgacaataatgttcgacattcatctacatcta---------------atcatgaggtatgttttccgtatattgaagtgtcggctaa |
13779145 |
T |
|
| Q |
101 |
ttgttgcagtagagataaacatcagttgaagtaatcaatctataaattatcattttcatattatctgtagacttcatgaggtaggctgcttcagattatc |
200 |
Q |
| |
|
|||||||| ||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||| |||||||||||| |
|
|
| T |
13779146 |
ttgttgcaatagagataaacatcatttggagtaatcaatctataaattataattttcatattatatgtagactaaatgaggtaggccacttcagattatc |
13779245 |
T |
|
| Q |
201 |
attttattattaagttcttgaagttgtgtgtcaatcacttgataaaatacctcaactccaaagttaaaaggagaagtagaaaaaattgattgttttaacc |
300 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||| |||| ||||||||||||| ||||||||||||| | |
|
|
| T |
13779246 |
attttattattaagttcttgaagttgggtgtcaatcacttgataaaataactgaactccaaagtgaaaaatagaagtagaaaaagttgattgttttaagc |
13779345 |
T |
|
| Q |
301 |
tttatttctcttttttcactaaccaccggatgcttcgatttgtttgattctggattagtcagtcatgaagctcacagtgaagactctgaaaggaagccat |
400 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13779346 |
tttatttctcttttttcactaaccactggatgcttcgatttctttgattctggatcagtcagtcatgaagctcacagtgaagactctgaaaggaagccat |
13779445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 19893952 - 19894358
Alignment:
| Q |
1 |
caacccaaaatgatgacaataatgttcgacattcatctacatctacacatgctccaaataatgatgaggtatgttttccttatattgaagtgtcggctaa |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||| |
|
|
| T |
19893952 |
caacccgaaatgatgacaataatgttcgacattcatctacatcta---------------atcatgaggtatgttttccgtatattgaagtgtcggctaa |
19894036 |
T |
|
| Q |
101 |
ttgttgcagtagagataaacatcagttgaagtaatcaatctataaattatcattttcatattatctgtagacttcatgaggtaggctgcttcagattatc |
200 |
Q |
| |
|
|||||||| ||||||||||||||||| | |||||||||||||||||||||||||||||||| || |||||| || |||||||||| |||||||||||| |
|
|
| T |
19894037 |
ttgttgcaatagagataaacatcagtaggagtaatcaatctataaattatcattttcatataatatgtagatttagtgaggtaggccacttcagattatc |
19894136 |
T |
|
| Q |
201 |
attttattattaagttcttgaagttgtgtgtcaatcacttgataaaatacctcaactccaaagttaaaaggagaagtagaaaaaattgattgttttaacc |
300 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||| ||||||||||||| || ||||||||||| |||| ||||||||||||| ||||||||||||| | |
|
|
| T |
19894137 |
attttattattaagttcttgaagttgggtgtcaatgacttgataaaataacttaactccaaagtgaaaaatagaagtagaaaaagttgattgttttaagc |
19894236 |
T |
|
| Q |
301 |
tttatttctcttttttcactaaccaccggatgcttcgatttgtttgattctggattagtcagtcatgaagctcacagtgaagactctgaaaggaagccat |
400 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19894237 |
tttatttctcttttttcactaaccattggatgcttcgatttctttgattctggatcagtcagtcatgaagctcacagtgaagactctgaaaggaagccat |
19894336 |
T |
|
| Q |
401 |
ttcgaaatcagagttcatcctt |
422 |
Q |
| |
|
||| |||||||||||||||||| |
|
|
| T |
19894337 |
ttcaaaatcagagttcatcctt |
19894358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 9e-46; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 321 - 422
Target Start/End: Complemental strand, 542606 - 542505
Alignment:
| Q |
321 |
aaccaccggatgcttcgatttgtttgattctggattagtcagtcatgaagctcacagtgaagactctgaaaggaagccatttcgaaatcagagttcatcc |
420 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
542606 |
aaccaccggatgcttcgatttctttgattctggatcagtcagtcatgaagctcacagtgaagactctgaaaggaagccatttcgaaatcagagttcatcc |
542507 |
T |
|
| Q |
421 |
tt |
422 |
Q |
| |
|
|| |
|
|
| T |
542506 |
tt |
542505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 203 - 327
Target Start/End: Complemental strand, 18168896 - 18168776
Alignment:
| Q |
203 |
tttattattaagttcttgaagttgtgtgtcaatcacttgataaaatacctcaactccaaagttaaaaggagaagtagaaaaaattgattgttttaacctt |
302 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||| |||||||||| |||| | |||| |||| ||||| |||||||| || |||||||||| |
|
|
| T |
18168896 |
tttattattaagttcttgaaggtgtgtgtcaatcacttggtaaaataccttaacttcgaagtgaaaaagagaattagaaaaa----gtttttttaacctt |
18168801 |
T |
|
| Q |
303 |
tatttctcttttttcactaaccacc |
327 |
Q |
| |
|
||| ||||||||||||||||||||| |
|
|
| T |
18168800 |
tatatctcttttttcactaaccacc |
18168776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 8729523 - 8729606
Alignment:
| Q |
1 |
caacccaaaatgatgacaataatgttcgacattcatctacatctacacatgctccaaataatgatgaggtatgttttccttata |
84 |
Q |
| |
|
|||||| | |||||||| |||||| | |||||||||||||||| |||||| | ||||||| | ||||||||||||||||||| |
|
|
| T |
8729523 |
caaccccagatgatgacgataatgggctacattcatctacatctgcacatggcctaaataatcacgaggtatgttttccttata |
8729606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 14460808 - 14460857
Alignment:
| Q |
206 |
attattaagttcttgaagttgtgtgtcaatcacttgataaaatacctcaa |
255 |
Q |
| |
|
||||||||| |||||||||||| | |||||||| |||||||||||||||| |
|
|
| T |
14460808 |
attattaagctcttgaagttgtctatcaatcacatgataaaatacctcaa |
14460857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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