View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8900_low_2 (Length: 559)

Name: NF8900_low_2
Description: NF8900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8900_low_2
NF8900_low_2
[»] chr5 (28 HSPs)
chr5 (146-352)||(30748025-30748232)
chr5 (146-352)||(30340053-30340260)
chr5 (357-543)||(30748297-30748483)
chr5 (351-543)||(29870834-29871026)
chr5 (352-543)||(30434471-30434662)
chr5 (362-503)||(30339828-30339969)
chr5 (396-542)||(4380357-4380503)
chr5 (351-503)||(30058936-30059088)
chr5 (362-503)||(30243675-30243816)
chr5 (352-505)||(30398663-30398816)
chr5 (351-499)||(30481980-30482128)
chr5 (352-505)||(17419192-17419345)
chr5 (362-543)||(29851958-29852139)
chr5 (146-216)||(30481726-30481796)
chr5 (19-88)||(30747897-30747966)
chr5 (19-88)||(30481602-30481671)
chr5 (351-543)||(30678503-30678688)
chr5 (362-499)||(29710277-29710414)
chr5 (288-343)||(30058563-30058618)
chr5 (365-434)||(30202743-30202812)
chr5 (364-490)||(30205102-30205228)
chr5 (244-301)||(29851761-29851818)
chr5 (363-431)||(17981534-17981602)
chr5 (45-76)||(29870508-29870539)
chr5 (457-498)||(30482158-30482199)
chr5 (148-180)||(29870580-29870612)
chr5 (364-428)||(30246178-30246242)
chr5 (319-351)||(30481888-30481920)
[»] chr7 (1 HSPs)
chr7 (354-543)||(26705914-26706103)
[»] chr4 (5 HSPs)
chr4 (362-528)||(20298025-20298191)
chr4 (362-504)||(20303931-20304072)
chr4 (458-543)||(20297938-20298023)
chr4 (362-436)||(13615451-13615525)
chr4 (148-180)||(20298402-20298434)
[»] chr1 (1 HSPs)
chr1 (362-436)||(7098005-7098079)


Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 146 - 352
Target Start/End: Original strand, 30748025 - 30748232
Alignment:
Q  146 ctatgatgaagaaaatgacctgaattagaacatttgtaactttagttgagcagtgaaatatctttcatgtataaagattctggtgctcattctgggg-ga 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  30748025 ctatgatgaagaaaatgacctgaattagaacatttgtaactttagttgagcagtgaaatatctttcatgtataaagattctggtgctcattctgggggga 30748124  T
Q  245 tgggttccaaagaagtcaagattgagaatatataaaaatatttttgaataaaaataaagtgaattgaggcaaataaggggaaatagagatcttaccagta 344  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30748125 tgggttccaaagaagtcaagattgagaatatataaaaatatttttgaataaaaataaagtgaattgaggcaaataaggggaaatagagatcttaccagta 30748224  T
Q  345 aaattgaa 352  Q
    ||||||||    
T  30748225 aaattgaa 30748232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 146 - 352
Target Start/End: Complemental strand, 30340260 - 30340053
Alignment:
Q  146 ctatgatgaagaaaatgacctgaattagaacatttgtaactttagttgagcagtgaaatatctttcatgtataaagattctggtgctcattctgggggat 245  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30340260 ctatgatgaagaaaatgacctgaattagaacatttgtaactttagttgagcagtgaaatatctttcatgtataaagattctggtgctcattctgggggat 30340161  T
Q  246 gggttccaaagaagtcaagattgag-aatatataaaaatatttttgaataaaaataaagtgaattgaggcaaataaggggaaatagagatcttaccagta 344  Q
    ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  30340160 gggttccaaagaagtcaagattgagaaatatataaaaatacttttgaataaaaataaagtgaattgaggcagataaggggaaatagagatcttaccagta 30340061  T
Q  345 aaattgaa 352  Q
    ||||||||    
T  30340060 aaattgaa 30340053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 357 - 543
Target Start/End: Original strand, 30748297 - 30748483
Alignment:
Q  357 tattgttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaaccaatgatattaagaagctcaaga 456  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  30748297 tatttttggaatatgagctatcttgtcccaatcctcccatgttccctctttgcatcgttcctctaatgttgggcaatcaatgatatcaagaagctcaaga 30748396  T
Q  457 gaagtgaggcgttgaataccctccggcaagcatcgcaatccttcacaatcccaaatcgttagaatcctaagggattgaagaccttcc 543  Q
    ||||||||| || |||||||||||||||||||||||||||||  |||| ||||||||  ||||   | |||||||||||||||||||    
T  30748397 gaagtgaggtgtcgaataccctccggcaagcatcgcaatcctctacaaccccaaatctgtagagctcgaagggattgaagaccttcc 30748483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 351 - 543
Target Start/End: Original strand, 29870834 - 29871026
Alignment:
Q  351 aaactttattgttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaaccaatgatattaagaagc 450  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||    ||||||    
T  29870834 aaactgtattattggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaaccctcaattgccagaagc 29870933  T
Q  451 tcaagagaagtgaggcgttgaataccctccggcaagcatcgcaatccttcacaatcccaaatcgttagaatcctaagggattgaagaccttcc 543  Q
    ||||| ||||||||| || |||||||||||||||||||||||||||||||||||| ||||||| ||| ||| | |||||||||||||||||||    
T  29870934 tcaagtgaagtgaggtgtcgaataccctccggcaagcatcgcaatccttcacaattccaaatccttaaaattcgaagggattgaagaccttcc 29871026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 352 - 543
Target Start/End: Original strand, 30434471 - 30434662
Alignment:
Q  352 aactttattgttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaaccaatgatattaagaagct 451  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||   |||||||    
T  30434471 aactctattcttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctttaatgttgggcaatcaatgatagacagaagct 30434570  T
Q  452 caagagaagtgaggcgttgaataccctccggcaagcatcgcaatccttcacaatcccaaatcgttagaatcctaagggattgaagaccttcc 543  Q
    |||||||||||||| || |||||||||||||||||||||||||||||  |||| ||||||||  ||||   | |||||||||||||||||||    
T  30434571 caagagaagtgaggtgtcgaataccctccggcaagcatcgcaatcctctacaaccccaaatcagtagagctcgaagggattgaagaccttcc 30434662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 362 - 503
Target Start/End: Complemental strand, 30339969 - 30339828
Alignment:
Q  362 ttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaaccaatgatattaagaagctcaagagaagt 461  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| | |||||||||||||||||    
T  30339969 ttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaattaatgatagtcagaagctcaagagaagt 30339870  T
Q  462 gaggcgttgaataccctccggcaagcatcgcaatccttcaca 503  Q
    |||| || ||||||||||||||||||||||||||||||||||    
T  30339869 gaggtgtcgaataccctccggcaagcatcgcaatccttcaca 30339828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 396 - 542
Target Start/End: Original strand, 4380357 - 4380503
Alignment:
Q  396 tgttccctctttgcatcgttcctctaatgttgggcaaccaatgatattaagaagctcaagagaagtgaggcgttgaataccctccggcaagcatcgcaat 495  Q
    |||||||||||||||||||||||||||||||||||||||||||||  | |||| |||||||||||||||| || ||||||||||||||||||||||||||    
T  4380357 tgttccctctttgcatcgttcctctaatgttgggcaaccaatgattctcagaacctcaagagaagtgaggtgtcgaataccctccggcaagcatcgcaat 4380456  T
Q  496 ccttcacaatcccaaatcgttagaatcctaagggattgaagaccttc 542  Q
    ||||  |||||||||||||||||| ||||||||||||||||||||||    
T  4380457 cctttgcaatcccaaatcgttagagtcctaagggattgaagaccttc 4380503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 351 - 503
Target Start/End: Original strand, 30058936 - 30059088
Alignment:
Q  351 aaactttattgttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaaccaatgatattaagaagc 450  Q
    ||||| |||| |||||||||||| |||||||||||||||||||||||||| ||  ||||||||||||| ||||||| |||||||||||||| | ||||||    
T  30058936 aaactgtatttttggaatatgagatatcttgtcccaatcctcccctgttcgcttcttgcatcgttcctttaatgttcggcaaccaatgatagtcagaagc 30059035  T
Q  451 tcaagagaagtgaggcgttgaataccctccggcaagcatcgcaatccttcaca 503  Q
    ||||||||||||||| || |||||||||||||||| |||||||||||||||||    
T  30059036 tcaagagaagtgaggtgtcgaataccctccggcaaacatcgcaatccttcaca 30059088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 362 - 503
Target Start/End: Complemental strand, 30243816 - 30243675
Alignment:
Q  362 ttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaaccaatgatattaagaagctcaagagaagt 461  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||   |   ||||| | || ||||||||||||    
T  30243816 ttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttggacatttataaatattcaaaacctcaagagaagt 30243717  T
Q  462 gaggcgttgaataccctccggcaagcatcgcaatccttcaca 503  Q
    |||| || ||||||||||||||||||||||||||||||||||    
T  30243716 gaggtgtcgaataccctccggcaagcatcgcaatccttcaca 30243675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 352 - 505
Target Start/End: Original strand, 30398663 - 30398816
Alignment:
Q  352 aactttattgttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaaccaatgatattaagaagct 451  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || ||||  | |||| ||    
T  30398663 aactgtatttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctttaatgttgggcaatcattgattgtcagaacct 30398762  T
Q  452 caagagaagtgaggcgttgaataccctccggcaagcatcgcaatccttcacaat 505  Q
    |||||||||||||| ||  |||||||||||| |||||||||||| ||| |||||    
T  30398763 caagagaagtgaggtgtctaataccctccggaaagcatcgcaattctttacaat 30398816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 351 - 499
Target Start/End: Original strand, 30481980 - 30482128
Alignment:
Q  351 aaactttattgttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaaccaatgatattaagaagc 450  Q
    ||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |    ||  | |||| |    
T  30481980 aaactgtatttttggaatatgagctatcttgtcccaatcctcccatgttccctctttgcatcgttcctctaatgttgggcattcccaaattgtcagaacc 30482079  T
Q  451 tcaagagaagtgaggcgttgaataccctccggcaagcatcgcaatcctt 499  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||    
T  30482080 tcaagagaagtgaggtgtcgaataccctccggcaagcatcgcaatcctt 30482128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 352 - 505
Target Start/End: Complemental strand, 17419345 - 17419192
Alignment:
Q  352 aactttattgttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaaccaatgatattaagaagct 451  Q
    ||||||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |  ||   || || |||| ||    
T  17419345 aactttatttttggaatatgagctatcttgtcccaatcctccccggttccctccttgcatcgttcctctaatgttggggagtcataaatgttcagaaact 17419246  T
Q  452 caagagaagtgaggcgttgaataccctccggcaagcatcgcaatccttcacaat 505  Q
    |  ||||||||||| || ||||||||||  ||||||||| ||| ||||||||||    
T  17419245 cgggagaagtgaggtgtcgaataccctctagcaagcatctcaaaccttcacaat 17419192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 362 - 543
Target Start/End: Original strand, 29851958 - 29852139
Alignment:
Q  362 ttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaaccaatgatattaagaagctcaagagaagt 461  Q
    |||||||||||| |||||||||||||||||| | ||||||| |||||||||||||||||||||||||||||    | ||    |||||||||||||||||    
T  29851958 ttggaatatgagatatcttgtcccaatcctcacatgttcccactttgcatcgttcctctaatgttgggcaatttttaattgacagaagctcaagagaagt 29852057  T
Q  462 gaggcgttgaataccctccggcaagcatcgcaatccttcacaatcccaaatcgttagaatcctaagggattgaagaccttcc 543  Q
    |||| ||  |||||||||||||||||||| |||||||| |||||    ||||  |||| | | |||||||||||||||||||    
T  29852058 gaggtgtccaataccctccggcaagcatctcaatcctttacaatatataatccgtagagttcgaagggattgaagaccttcc 29852139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 146 - 216
Target Start/End: Original strand, 30481726 - 30481796
Alignment:
Q  146 ctatgatgaagaaaatgacctgaattagaacatttgtaactttagttgagcagtgaaatatctttcatgta 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30481726 ctatgatgaagaaaatgacctgaattagaacatttgtaactttagttgagcagtgaaatatctttcatgta 30481796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 30747897 - 30747966
Alignment:
Q  19 tttgttccattaatcccgttatttgtcttgtgtgttgaaggcaatcctaaccattcaattaaatccccac 88  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30747897 tttgttccattaatcccgttatttgtcttgtgtgttgaaggcaatcctaaccattcaattaaatccccac 30747966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 30481602 - 30481671
Alignment:
Q  19 tttgttccattaatcccgttatttgtcttgtgtgttgaaggcaatcctaaccattcaattaaatccccac 88  Q
    ||||||||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||    
T  30481602 tttgttccattaatcccgttatttgtcttgtgtgtcgacgccaatcctaaccattcaattaaatccccac 30481671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 351 - 543
Target Start/End: Complemental strand, 30678688 - 30678503
Alignment:
Q  351 aaactttattgttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttc-ctctaatgttgggcaaccaatgatattaagaag 449  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||  ||||||||||||| | ||| | | |||||||| ||   |   |||||          
T  30678688 aaactgtatttttggaatatgagctatcttgtcccaatcctcccccattccctctttgcacccttctcacaaatgttggacatttataaatatt------ 30678595  T
Q  450 ctcaagagaagtgaggcgttgaataccctccggcaagcatcgcaatccttcacaatcccaaatcgttagaatcctaagggattgaagaccttcc 543  Q
      ||||||| |||||| || ||||||||||||||||||||||||||||||||||||  | |||| ||||| | | |||||||||||||||||||    
T  30678594 --caagagatgtgaggtgtcgaataccctccggcaagcatcgcaatccttcacaattacgaatctttagagttcgaagggattgaagaccttcc 30678503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 362 - 499
Target Start/End: Complemental strand, 29710414 - 29710277
Alignment:
Q  362 ttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaaccaatgatattaagaagctcaagagaagt 461  Q
    |||||| ||| |||||||||||| ||||||||| || |||||| |||||||||||||||||||||| | ||  |   | ||  |||| ||||||||||||    
T  29710414 ttggaacatgcgctatcttgtcctaatcctcccttgctccctccttgcatcgttcctctaatgttgagaaattataaaaatacagaacctcaagagaagt 29710315  T
Q  462 gaggcgttgaataccctccggcaagcatcgcaatcctt 499  Q
    ||||||   |||||||||||| ||||||||||||||||    
T  29710314 gaggcgagcaataccctccggaaagcatcgcaatcctt 29710277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 288 - 343
Target Start/End: Original strand, 30058563 - 30058618
Alignment:
Q  288 ttgaataaaaataaagtgaattgaggcaaataaggggaaatagagatcttaccagt 343  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  30058563 ttgaataaaaataaagtgaattgaggcagataaggggaaatagagatcttaccagt 30058618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 365 - 434
Target Start/End: Original strand, 30202743 - 30202812
Alignment:
Q  365 gaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaacc 434  Q
    ||||||| |||||||||||||| | ||||||||||||||| |||||||||||||  ||| ||||||||||    
T  30202743 gaatatgtgctatcttgtcccagttctcccctgttccctccttgcatcgttccttcaatattgggcaacc 30202812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 364 - 490
Target Start/End: Original strand, 30205102 - 30205228
Alignment:
Q  364 ggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaaccaatgatattaagaagctcaagagaagtga 463  Q
    |||||||| | |||||||| ||| ||||| ||||||||||| |||||||| || |||| |||||| ||||||   ||  | |||||||| ||||||||||    
T  30205102 ggaatatgcgatatcttgtaccagtcctctcctgttccctccttgcatcgctcttctagtgttggacaaccacgaattgtcagaagctccagagaagtga 30205201  T
Q  464 ggcgttgaataccctccggcaagcatc 490  Q
    |  || ||||||| ||||| |||||||    
T  30205202 gatgtcgaataccttccggtaagcatc 30205228  T

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Target: chr5; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 244 - 301
Target Start/End: Original strand, 29851761 - 29851818
Alignment:
Q  244 atgggttccaaagaagtcaagattgagaatatataaaaatatttttgaataaaaataa 301  Q
    ||||||| |||||||||||| | |||||||||||||||| ||||||||| ||||||||    
T  29851761 atgggttacaaagaagtcaacaatgagaatatataaaaagatttttgaaaaaaaataa 29851818  T

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Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 363 - 431
Target Start/End: Original strand, 17981534 - 17981602
Alignment:
Q  363 tggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggca 431  Q
    ||||||||| |||||||||||||| || || || |||||||| |||||||| | ||| |||||||||||    
T  17981534 tggaatatgggctatcttgtcccagtcttctccggttccctcattgcatcgcttctccaatgttgggca 17981602  T

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Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 76
Target Start/End: Original strand, 29870508 - 29870539
Alignment:
Q  45 cttgtgtgttgaaggcaatcctaaccattcaa 76  Q
    ||||||||||||||||||||||||||||||||    
T  29870508 cttgtgtgttgaaggcaatcctaaccattcaa 29870539  T

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Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 498
Target Start/End: Original strand, 30482158 - 30482199
Alignment:
Q  457 gaagtgaggcgttgaataccctccggcaagcatcgcaatcct 498  Q
    ||||||||| || ||||||||||||||||||||| |||||||    
T  30482158 gaagtgaggtgtcgaataccctccggcaagcatctcaatcct 30482199  T

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Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 148 - 180
Target Start/End: Original strand, 29870580 - 29870612
Alignment:
Q  148 atgatgaagaaaatgacctgaattagaacattt 180  Q
    |||||||||||||| ||||||||||||||||||    
T  29870580 atgatgaagaaaattacctgaattagaacattt 29870612  T

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Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 364 - 428
Target Start/End: Complemental strand, 30246242 - 30246178
Alignment:
Q  364 ggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgg 428  Q
    |||||||||| ||||||||||| |||||||| |||  |||  |||||||| |||| |||||||||    
T  30246242 ggaatatgagatatcttgtcccgatcctcccatgtctccttcttgcatcgctcctttaatgttgg 30246178  T

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Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 319 - 351
Target Start/End: Original strand, 30481888 - 30481920
Alignment:
Q  319 aaggggaaatagagatcttaccagtaaaattga 351  Q
    |||||||||| ||||||||||||||||||||||    
T  30481888 aaggggaaattgagatcttaccagtaaaattga 30481920  T

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Target: chr7 (Bit Score: 118; Significance: 6e-60; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 354 - 543
Target Start/End: Original strand, 26705914 - 26706103
Alignment:
Q  354 ctttattgttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaaccaatgatattaagaagctca 453  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||  | |||| ||||    
T  26705914 ctttatttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaactccaaattctcagaaactca 26706013  T
Q  454 agagaagtgaggcgttgaataccctccggcaagcatcgcaatccttcacaatcccaaatcgttagaatcctaagggattgaagaccttcc 543  Q
    |||||||||||| || |||||||||| ||||||||||||| ||||| |||||||||||||  |||| |||||||||||||||||||||||    
T  26706014 agagaagtgaggtgtcgaataccctctggcaagcatcgcattcctttacaatcccaaatctctagagtcctaagggattgaagaccttcc 26706103  T

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Target: chr4 (Bit Score: 95; Significance: 3e-46; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 362 - 528
Target Start/End: Complemental strand, 20298191 - 20298025
Alignment:
Q  362 ttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaaccaatgatattaagaagctcaagagaagt 461  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||| ||||||  |  |||| | |||||||||||||||||    
T  20298191 ttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgtaactttaatgtggggcaataaccgatagtcagaagctcaagagaagt 20298092  T
Q  462 gaggcgttgaataccctccggcaagcatcgcaatccttcacaatcccaaatcgttagaatcctaagg 528  Q
    |||| ||||||| || || ||||||||| |||||||||||||| |||||||| ||||| ||||||||    
T  20298091 gaggtgttgaatgccttctggcaagcattgcaatccttcacaaccccaaatctttagagtcctaagg 20298025  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 362 - 504
Target Start/End: Complemental strand, 20304072 - 20303931
Alignment:
Q  362 ttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaaccaatgatattaagaagctcaagagaagt 461  Q
    |||||||||| |||||||||||| ||||||| |||||||||   ||||| ||||||| ||||||||||||  ||   ||| | | || |||||| |||||    
T  20304072 ttggaatatgcgctatcttgtcc-aatcctcgcctgttcccgtcttgcaccgttcctttaatgttgggcattcataaatactcaaaacctcaagtgaagt 20303974  T
Q  462 gaggcgttgaataccctccggcaagcatcgcaatccttcacaa 504  Q
    ||||  | ||||||| || |||||||||| |||||||| ||||    
T  20303973 gaggaatcgaataccttcaggcaagcatctcaatcctttacaa 20303931  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 458 - 543
Target Start/End: Complemental strand, 20298023 - 20297938
Alignment:
Q  458 aagtgaggcgttgaataccctccggcaagcatcgcaatccttcacaatcccaaatcgttagaatcctaagggattgaagaccttcc 543  Q
    |||||||| ||||||||||||||||||||||| ||||||||| |||||  | |||   |||| | | |||||||||||||||||||    
T  20298023 aagtgaggtgttgaataccctccggcaagcattgcaatcctttacaataactaattcctagagttcgaagggattgaagaccttcc 20297938  T

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Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 362 - 436
Target Start/End: Original strand, 13615451 - 13615525
Alignment:
Q  362 ttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaaccaa 436  Q
    |||||||||| |||||||||||||| || |||| ||||||||| |||||||| | ||  ||||||||||| ||||    
T  13615451 ttggaatatgcgctatcttgtcccagtcttcccatgttccctccttgcatcgcttcttcaatgttgggcatccaa 13615525  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 148 - 180
Target Start/End: Complemental strand, 20298434 - 20298402
Alignment:
Q  148 atgatgaagaaaatgacctgaattagaacattt 180  Q
    |||||||||||||| ||||||||||||||||||    
T  20298434 atgatgaagaaaattacctgaattagaacattt 20298402  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 362 - 436
Target Start/End: Original strand, 7098005 - 7098079
Alignment:
Q  362 ttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaaccaa 436  Q
    |||||||||| |||||||||||||| || |||||||||||||| |||||||| |||   ||||||||||| ||||    
T  7098005 ttggaatatgggctatcttgtcccagtcttcccctgttccctccttgcatcgctccgtcaatgttgggcatccaa 7098079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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