View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8900_low_27 (Length: 368)
Name: NF8900_low_27
Description: NF8900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8900_low_27 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 173; Significance: 6e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 16 - 338
Target Start/End: Original strand, 2783860 - 2784174
Alignment:
| Q |
16 |
catatgtaagggttgggattgaaattccaaacacctaatttattcattttaaaaagtgaattatatcaactaaattgtttgatnnnnnnnntaaagttat |
115 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
2783860 |
catatgtaagggttgg-attgaaattccaaacacctaatttattcattttaaaaagtgaattatatcaactaaattatttgacaaaaaaaataaagttat |
2783958 |
T |
|
| Q |
116 |
gatgattgataaaactctgaaatgttataaattttagttcaaccaacaaaaatacaaaaattgttaggtcgaacttcatgatggcgttcgaacatcgaca |
215 |
Q |
| |
|
||||| |||||||||||| |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2783959 |
gatgagtgataaaactctcaaatgttataaattttagttcaact--------tacaaatattgttaggtcgaacttcatgatggcgttcgaacatcgaca |
2784050 |
T |
|
| Q |
216 |
cctccacttacatgtatgagtttataataacttacttatttcgtctatctat-nnnnnnnnnnnnnnnnnnctcccaaaacatttaacaaagtagcatta |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2784051 |
cctccacttacatgtatgagtttataataacttacttatttcatctatctataaaaaaaaaaaaaaaaaaactcccaaaacatttaacaaagtagcatta |
2784150 |
T |
|
| Q |
315 |
tgagaagtgtataaattcatgaca |
338 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
2784151 |
tgagaagtgtataaattcatgaca |
2784174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 173 - 267
Target Start/End: Original strand, 42650201 - 42650296
Alignment:
| Q |
173 |
aaattgttaggtcgaacttcatgat-ggcgttcgaacatcgacacctccacttacatgtatgagtttataataacttacttatttcgtctatctat |
267 |
Q |
| |
|
|||||||||||||| | |||||| || |||||||| ||| ||||||||||| |||||||||||||||| |||| | ||||||||||||||| |
|
|
| T |
42650201 |
aaattgttaggtcggatgccatgattggggttcgaacctcggtacctccacttatgtgtatgagtttataatgactttatcatttcgtctatctat |
42650296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 77
Target Start/End: Complemental strand, 16777009 - 16776977
Alignment:
| Q |
45 |
aacacctaatttattcattttaaaaagtgaatt |
77 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |
|
|
| T |
16777009 |
aacaccttatttattcattttaaaaagtgaatt |
16776977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University