View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8900_low_29 (Length: 359)
Name: NF8900_low_29
Description: NF8900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8900_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 18 - 350
Target Start/End: Original strand, 26107173 - 26107492
Alignment:
| Q |
18 |
agattaagagatttcgcatttcaggttcaaactccgttgatcc-ctctgagtgcaactttattttgtttgtcatttttgtgcagcgttgtttgatatgct |
116 |
Q |
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| T |
26107173 |
agatcaagagatttcacatttcaggttcaaactccgttgattctctctgagtgcaactttattttatttgtcatttttgtgcagcgttatttgatatgct |
26107272 |
T |
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| Q |
117 |
ttcttgttgcaatcatcgttctagttttttatcgttacaaattgaatcaataacatcgacgataactcatgaacccgttgacatgagtaaaaaacaaaat |
216 |
Q |
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|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
26107273 |
ttcttgttgcaatcttcgt----------------tacaaattgaatcaataacatcgacgataactcatgaacccgttgacatgagtaaaaaacaacat |
26107356 |
T |
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| Q |
217 |
gtttcgatgttgaaatctgtattaagaagacatttccaaaaaataactacgtataacagaattaaaatatcataaaacattgaaaatgttaaatataaga |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26107357 |
gtttcgatgttgaaatctgtattaagaagacatttccaaaaaataactacgtataacagaattaaaatatcataaaacattgaaaatgttaaatataaga |
26107456 |
T |
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| Q |
317 |
--atcgtgcgttttctcatcctttctgccacaggtt |
350 |
Q |
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||| ||||||||||||||||||||||| |||||| |
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| T |
26107457 |
atatcatgcgttttctcatcctttctgccccaggtt |
26107492 |
T |
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