View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8900_low_3 (Length: 550)

Name: NF8900_low_3
Description: NF8900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8900_low_3
NF8900_low_3
[»] chr8 (13 HSPs)
chr8 (18-462)||(38209970-38210408)
chr8 (467-532)||(23606552-23606617)
chr8 (467-532)||(23798183-23798248)
chr8 (467-532)||(37430080-37430145)
chr8 (467-532)||(41879295-41879360)
chr8 (467-532)||(42600898-42600963)
chr8 (467-532)||(13534610-13534675)
chr8 (467-532)||(13624150-13624215)
chr8 (467-531)||(2952141-2952205)
chr8 (470-532)||(10917506-10917568)
chr8 (467-532)||(20003732-20003797)
chr8 (471-532)||(45475932-45475993)
chr8 (467-531)||(3048439-3048503)
[»] chr1 (22 HSPs)
chr1 (18-462)||(19553561-19553998)
chr1 (18-462)||(52585460-52585904)
chr1 (18-296)||(50358481-50358758)
chr1 (306-462)||(50358142-50358296)
chr1 (18-117)||(17014155-17014254)
chr1 (467-532)||(17169082-17169147)
chr1 (468-532)||(51607363-51607427)
chr1 (467-530)||(13913402-13913465)
chr1 (467-532)||(6771920-6771985)
chr1 (467-532)||(40501711-40501776)
chr1 (461-530)||(50881557-50881626)
chr1 (467-510)||(9172944-9172987)
chr1 (467-510)||(9180926-9180969)
chr1 (470-532)||(19955843-19955905)
chr1 (467-532)||(14146426-14146491)
chr1 (467-532)||(22865382-22865447)
chr1 (469-532)||(16140181-16140244)
chr1 (467-532)||(5027677-5027742)
chr1 (467-532)||(5316806-5316871)
chr1 (467-531)||(27906650-27906714)
chr1 (480-532)||(41697072-41697124)
chr1 (467-531)||(44655868-44655932)
[»] scaffold0045 (1 HSPs)
scaffold0045 (18-462)||(28847-29307)
[»] chr2 (11 HSPs)
chr2 (382-454)||(12340918-12340990)
chr2 (74-121)||(12340600-12340647)
chr2 (467-532)||(24410554-24410619)
chr2 (467-532)||(26716244-26716309)
chr2 (467-532)||(10762489-10762554)
chr2 (467-532)||(27506663-27506728)
chr2 (467-531)||(3155333-3155397)
chr2 (467-531)||(4506010-4506074)
chr2 (467-531)||(40636253-40636317)
chr2 (467-530)||(6965122-6965185)
chr2 (158-269)||(12340685-12340789)
[»] chr5 (16 HSPs)
chr5 (467-532)||(16799244-16799309)
chr5 (467-532)||(38869283-38869348)
chr5 (467-532)||(28822256-28822321)
chr5 (467-532)||(36187799-36187864)
chr5 (471-525)||(40389461-40389515)
chr5 (467-532)||(7671049-7671114)
chr5 (471-532)||(16198717-16198778)
chr5 (467-531)||(15480010-15480074)
chr5 (467-532)||(19523315-19523380)
chr5 (467-532)||(27079128-27079193)
chr5 (468-532)||(2275006-2275070)
chr5 (472-532)||(9364407-9364467)
chr5 (467-532)||(30854445-30854510)
chr5 (467-532)||(31194532-31194597)
chr5 (467-532)||(31881352-31881417)
chr5 (471-531)||(34756289-34756349)
[»] chr4 (21 HSPs)
chr4 (467-532)||(16882317-16882382)
chr4 (469-532)||(40089645-40089708)
chr4 (467-532)||(34027699-34027764)
chr4 (467-532)||(54780899-54780964)
chr4 (469-532)||(38352189-38352252)
chr4 (470-532)||(37777147-37777209)
chr4 (467-532)||(32128705-32128770)
chr4 (467-532)||(32915506-32915571)
chr4 (467-532)||(54083164-54083229)
chr4 (469-531)||(34768498-34768560)
chr4 (474-532)||(43455460-43455518)
chr4 (467-532)||(1105652-1105717)
chr4 (467-532)||(16845142-16845206)
chr4 (467-531)||(2790663-2790727)
chr4 (479-530)||(23508443-23508494)
chr4 (467-510)||(24969739-24969782)
chr4 (467-530)||(47129109-47129172)
chr4 (477-530)||(10428130-10428183)
chr4 (467-532)||(10979023-10979088)
chr4 (467-532)||(16922249-16922314)
chr4 (467-531)||(55255379-55255443)
[»] chr3 (17 HSPs)
chr3 (467-532)||(34290558-34290623)
chr3 (466-532)||(37168486-37168552)
chr3 (467-532)||(21582891-21582956)
chr3 (467-532)||(47467803-47467868)
chr3 (467-531)||(27078490-27078554)
chr3 (467-531)||(27084287-27084351)
chr3 (467-525)||(29620368-29620426)
chr3 (467-532)||(8073261-8073326)
chr3 (467-532)||(48720433-48720498)
chr3 (467-532)||(54407077-54407142)
chr3 (467-532)||(43207161-43207226)
chr3 (467-532)||(44708595-44708660)
chr3 (467-532)||(50939156-50939221)
chr3 (467-531)||(36715946-36716010)
chr3 (467-531)||(38681015-38681079)
chr3 (467-531)||(54619125-54619189)
chr3 (467-531)||(50258546-50258610)
[»] scaffold0070 (1 HSPs)
scaffold0070 (467-532)||(1458-1523)
[»] chr7 (13 HSPs)
chr7 (470-531)||(26254110-26254171)
chr7 (467-532)||(29077335-29077400)
chr7 (462-525)||(8171456-8171519)
chr7 (467-532)||(10329331-10329396)
chr7 (467-532)||(12596211-12596276)
chr7 (467-532)||(20091201-20091266)
chr7 (467-532)||(25010542-25010607)
chr7 (467-530)||(18776687-18776750)
chr7 (469-532)||(24525605-24525668)
chr7 (469-531)||(23550994-23551056)
chr7 (467-532)||(47984889-47984954)
chr7 (467-532)||(48983760-48983825)
chr7 (467-532)||(8239802-8239867)
[»] chr6 (8 HSPs)
chr6 (467-532)||(27788612-27788677)
chr6 (467-532)||(17354073-17354138)
chr6 (469-532)||(20711644-20711707)
chr6 (467-532)||(30832447-30832512)
chr6 (467-531)||(13727321-13727385)
chr6 (467-531)||(21280665-21280729)
chr6 (467-532)||(24710918-24710983)
chr6 (467-532)||(27314101-27314166)
[»] scaffold0039 (1 HSPs)
scaffold0039 (467-532)||(106654-106719)
[»] scaffold0001 (1 HSPs)
scaffold0001 (467-532)||(183175-183240)


Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 462
Target Start/End: Complemental strand, 38210408 - 38209970
Alignment:
Q  18 tttttaagcaaaaatccaccttgcatatagtagtatgttttgattagatgcacattttattttatttttcccaaatgagattcacattattttagagtta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  38210408 tttttaagcaaaaatccaccttgcatatagtagtatgttttgattagatgcacattttattttatttttcctaaatgagattcacattattttagagtta 38210309  T
Q  118 atcctatccnnnnnnnnntatggtttagagttnnnnnnnnttaaaatagcagtaattatacacggcacagactactattacttctggaattttcaaagaa 217  Q
    |||||||||          || ||||||||||        ||||||||||||||||| || |||||| ||||||||||||||||||||||||||||||||    
T  38210308 atcctatccaaaaaaaaaaatagtttagagttaaaaaaa-ttaaaatagcagtaattgtagacggcagagactactattacttctggaattttcaaagaa 38210210  T
Q  218 tagtcaatatgcttggttacaattccgagaaatacacaccactctaaacaataatctctccaactagtttatattctgtnnnnnnnnntcatcaaacact 317  Q
    |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |||             ||| |||||||     
T  38210209 tagtcaatatgcttggttacaattccaagaaatacacaccactgtaaacaataatctctccaactagtttacatt---aaaaaaaaaatcaacaaacacc 38210113  T
Q  318 ttccccatctctttctatcctttccacatgtgacctttccctttcacattctacnnnnnnnnnncttcttcttctacatcaatatgtattgttatcatgt 417  Q
    ||||||||||||||||||||||||| |||||||||||||||||||| |||||||          ||||||||||||||||||| ||||||||||||||||    
T  38210112 ttccccatctctttctatcctttccgcatgtgacctttccctttcatattctac--ttttttttcttcttcttctacatcaatgtgtattgttatcatgt 38210015  T
Q  418 caaagatgcaattaaaatagtgaaagcaaaaaccacttaagatga 462  Q
    |||||||||||||||||||||||||||| ||||||||||||||||    
T  38210014 caaagatgcaattaaaatagtgaaagcataaaccacttaagatga 38209970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 467 - 532
Target Start/End: Original strand, 23606552 - 23606617
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    |||||||||||||||||||||||| |||| ||||||||||||||   |||| ||||||| ||||||    
T  23606552 gccgtccctaagaattcggaggctcggctctgggaatgaaaagagaccagtgataaaatcaaaacg 23606617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 467 - 532
Target Start/End: Original strand, 23798183 - 23798248
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    |||||||||||||||||||||||| |||| |||||| ||||||| |||| | ||||||| ||||||    
T  23798183 gccgtccctaagaattcggaggctcggctctgggaacgaaaagaggtcaatgataaaatcaaaacg 23798248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 467 - 532
Target Start/End: Original strand, 37430080 - 37430145
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    ||||||||| |||||||||||||| |||| |||||||||||||| | |||| ||||||| ||||||    
T  37430080 gccgtccctgagaattcggaggctcggctctgggaatgaaaagaggccagtgataaaatcaaaacg 37430145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 467 - 532
Target Start/End: Complemental strand, 41879360 - 41879295
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    ||||||||| |||||||| ||||| |||| |||||||||||||| || ||| ||||||||||||||    
T  41879360 gccgtccctgagaattcgaaggctcggctctgggaatgaaaagaggttagtgataaaattaaaacg 41879295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 467 - 532
Target Start/End: Complemental strand, 42600963 - 42600898
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    |||||||||||||||||||||||| |||| ||  |||||||||| |||||| ||||||| ||||||    
T  42600963 gccgtccctaagaattcggaggctcggctctgaaaatgaaaagaggtcagtgataaaatcaaaacg 42600898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 467 - 532
Target Start/End: Original strand, 13534610 - 13534675
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    ||||||||| | |||||||||||| |||| |||||||||||||| | |||| ||||||| ||||||    
T  13534610 gccgtccctgaaaattcggaggctcggctctgggaatgaaaagaggccagtgataaaatcaaaacg 13534675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 467 - 532
Target Start/End: Original strand, 13624150 - 13624215
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    ||||||||| | |||||||||||| |||| |||||||||||||| | |||| ||||||| ||||||    
T  13624150 gccgtccctgaaaattcggaggctcggctctgggaatgaaaagaggccagtgataaaatcaaaacg 13624215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 467 - 531
Target Start/End: Original strand, 2952141 - 2952205
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaac 531  Q
    ||||||||| |||||||||||||| |||| ||| |||||||||| | |||| ||||||| |||||    
T  2952141 gccgtccctgagaattcggaggctcggctctggaaatgaaaagaggccagtgataaaatcaaaac 2952205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 470 - 532
Target Start/End: Complemental strand, 10917568 - 10917506
Alignment:
Q  470 gtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    |||| |||||||||||||||| |||| || ||||||||||| | |||| ||||||| ||||||    
T  10917568 gtccttaagaattcggaggctcggctctgagaatgaaaagaggccagtgataaaatcaaaacg 10917506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 532
Target Start/End: Original strand, 20003732 - 20003797
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    ||||||||| |||||| ||||||| ||||  ||||||||||||| | |||| ||||||| ||||||    
T  20003732 gccgtccctgagaatttggaggctcggctcggggaatgaaaagaggccagtgataaaatcaaaacg 20003797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 471 - 532
Target Start/End: Complemental strand, 45475993 - 45475932
Alignment:
Q  471 tccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    ||||| |||||||||||||| ||||  ||||||||||||| | |||| ||||||| ||||||    
T  45475993 tccctgagaattcggaggctcggctcggggaatgaaaagaggccagtgataaaatcaaaacg 45475932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 467 - 531
Target Start/End: Original strand, 3048439 - 3048503
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaac 531  Q
    |||||| || |||||||||||||| |||| ||| |||||||||| | |||| ||||||| |||||    
T  3048439 gccgtctctgagaattcggaggctcggctctggaaatgaaaagaggccagtgataaaatcaaaac 3048503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 18 - 462
Target Start/End: Complemental strand, 19553998 - 19553561
Alignment:
Q  18 tttttaagcaaaaatccaccttgcatatagtagtatgttttgattagatgcacattttattttatttttcccaaatgagattcacattattttagagtta 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  19553998 tttttaagcaaaaatccaccttgcatatagtagtatgttttgattagatgcatattttattttatttttcc-aaatgagattcacattattttagagtta 19553900  T
Q  118 atcctatccnnnnnnnnnta-tggtttagagttnnnnnnnnttaaaatagcagtaattatacacggcacagactactattacttctggaattttcaaaga 216  Q
    |||||||||          | | || |||||||        ||||||||||||||||| ||||||||||||||||||||||||| ||| |||| ||||||    
T  19553899 atcctatcccaaaaaaaaaaatagtatagagttaaaaaaaattaaaatagcagtaattgtacacggcacagactactattacttttgggattt-caaaga 19553801  T
Q  217 atagtcaatatgcttggttacaattccgagaaatacacaccactctaaacaataatctctccaactagtttatattctgtnnnnnnnnntcatcaaacac 316  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| ||    |         |||||||||||    
T  19553800 atagtcaatatgcttggttacaattccaagaaatacacaccactgtaaacaataatctctccaactagtttacat----taaaaaaaaatcatcaaacac 19553705  T
Q  317 tttccccatctctttctatcctttccacatgtgacctttccctttcacattctacnnnnnnnnnncttcttcttctacatcaatatgtattgttatcatg 416  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||          |||||||||||||||||||||||||||||||||||    
T  19553704 tttccccatctctttctatcctttccacatgcgacctttccctttcatattctac--ttttttttcttcttcttctacatcaatatgtattgttatcatg 19553607  T
Q  417 tcaaagatgcaattaaaatagtgaaagcaaaaaccacttaagatga 462  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  19553606 tcaaagatgcaattaaaatagtgaaagcataaaccacttaagatga 19553561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 18 - 462
Target Start/End: Original strand, 52585460 - 52585904
Alignment:
Q  18 tttttaagcaaaaatccaccttgcatatagtagtatgttttgattagatgcacattttatttta-tttttcccaaatgagattcacattattttagagtt 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||| ||    
T  52585460 tttttaagcaaaaatccaccttgcatatagtagtatgttttgattaaatgcacattttattttatttttttccaaatgagattcacattattttagaatt 52585559  T
Q  117 aatcctatcc--nnnnnnnnntatggtttagagttnnnnnnnnttaaaatagcagtaatta-------tacacggcacagactactattacttctggaat 207  Q
    ||||||||||           ||| ||||||||||        ||||||||||||||||||       ||||||||| ||||| ||||| ||||| ||||    
T  52585560 aatcctatcccaaaaaaaaaatatagtttagagtt-aaaaaaattaaaatagcagtaattactaattgtacacggcagagacttctattgcttcttgaat 52585658  T
Q  208 tttcaaagaatagtcaatatgcttggttacaattccgagaaatacacaccactctaaacaataatctctccaactagtttatattctgtnnnnnnnnntc 307  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||| ||    |         ||    
T  52585659 tttcaaagaatagtcaatatgtttggttacaattccaagaaatacacaccattgtaaacaataatctctccaactagtttacat----taaaaaaaaatc 52585754  T
Q  308 atcaaacactttccccatctctttctatcctttccacatgtgacctttccctttcacattctacnnnnnnnnnncttcttcttctacatcaatatgtatt 407  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||           |||||||||||||||||||||||||    
T  52585755 atcaaacactttccccatctctttctatcctttccgcatgtgacctttccctttcatattctactttttt-----ttcttcttctacatcaatatgtatt 52585849  T
Q  408 gttatcatgtcaaagatgcaattaaaatagtgaaagcaaaaaccacttaagatga 462  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  52585850 gttatcatgtcaaagatgcaattaaaatagtgaaagcataaaccacttaagatga 52585904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 296
Target Start/End: Complemental strand, 50358758 - 50358481
Alignment:
Q  18 tttttaagcaaaaatccaccttgcatatagtagtatgttttgattagatgcacattttattttatttttcccaaatgagattcacattattttagagtta 117  Q
    ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50358758 tttttaagcaaaaatccaccttgcatacagtaatatgttttgattagatgcacattttattttatttttcccaaatgagattcacattattttagagtta 50358659  T
Q  118 atcctatccnnnnnnnnntatggtttagagttnnnnnnnnttaaaatagcagtaattatacacggcacagactactattacttctggaattttcaaagaa 217  Q
    |||||||||           | ||||||||||        ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  50358658 atcctatccaaaaaaaaaattagtttagagttaaaaaaa-ttaaaatagcagtaattgtacacggcacagactactattacttctggaattttcaaagaa 50358560  T
Q  218 tagtcaatatgcttggttacaattccgagaaatacacaccactctaaacaataatctctccaactagtttatattctgt 296  Q
    |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  50358559 tagtcaatatgcttggttacaattccaagagatacacaccactctaaacaataatctctccaactagtttacattctgt 50358481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 306 - 462
Target Start/End: Complemental strand, 50358296 - 50358142
Alignment:
Q  306 tcatcaaacactttccccatctctttctatcctttccacatgtgacctttccctttcacattctacnnnnnnnnnncttcttcttctacatcaatatgta 405  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||          ||||||||| |||||||||||||     
T  50358296 tcatcaaacaccttccccatctctttctatcctttccgcatgtgacctttccctttcacattctactttttttt--cttcttcttttacatcaatatgtt 50358199  T
Q  406 ttgttatcatgtcaaagatgcaattaaaatagtgaaagcaaaaaccacttaagatga 462  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  50358198 ttgttatcatgtcaaagatgcaattaaaatagtgaaagcataaaccacttaagatga 50358142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 17014254 - 17014155
Alignment:
Q  18 tttttaagcaaaaatccaccttgcatatagtagtatgttttgattagatgcacattttattttatttttcccaaatgagattcacattattttagagtta 117  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||    
T  17014254 tttttaaacaaaaatccaccttgcatatagtagtatgttttgattagatgcacattttattttatttttcccaagtgagattcacgttattttagagtta 17014155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 467 - 532
Target Start/End: Complemental strand, 17169147 - 17169082
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    |||||||||||||||||||||||| |||| ||| |||||||||| |||||| ||||||| ||||||    
T  17169147 gccgtccctaagaattcggaggctcggctctggaaatgaaaagaggtcagtgataaaatcaaaacg 17169082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 468 - 532
Target Start/End: Original strand, 51607363 - 51607427
Alignment:
Q  468 ccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    |||||||||| |||||||||||| |||| |||||||||||||| |||||| ||||||| ||||||    
T  51607363 ccgtccctaaaaattcggaggctcggctctgggaatgaaaagaggtcagtgataaaatcaaaacg 51607427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 467 - 530
Target Start/End: Original strand, 13913402 - 13913465
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaa 530  Q
    ||||||||||||||||||||||||||||| || ||||||||||| | |||| ||||||| ||||    
T  13913402 gccgtccctaagaattcggaggcttggctctgagaatgaaaagatgccagtgataaaatcaaaa 13913465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 467 - 532
Target Start/End: Complemental strand, 6771985 - 6771920
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    ||||||||| |||||||||||||| |||| |||||||||||||| | |||| ||||||| ||||||    
T  6771985 gccgtccctgagaattcggaggctcggctctgggaatgaaaagaggccagtgataaaatcaaaacg 6771920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 467 - 532
Target Start/End: Original strand, 40501711 - 40501776
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    |||||||||||||||||||||||| | || || ||||||||||| |||||| ||||||| ||||||    
T  40501711 gccgtccctaagaattcggaggctcgactctgagaatgaaaagaggtcagtgataaaatcaaaacg 40501776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 461 - 530
Target Start/End: Complemental strand, 50881626 - 50881557
Alignment:
Q  461 gacaacgccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaa 530  Q
    ||||| ||||||||| |||||||||||||| |||| ||| |||||||||| | |||| ||||||||||||    
T  50881626 gacaaggccgtccctgagaattcggaggctcggctctggaaatgaaaagaggccagtgataaaattaaaa 50881557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 467 - 510
Target Start/End: Original strand, 9172944 - 9172987
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaaga 510  Q
    |||||||||||||||||||||||| |||| ||||||||||||||    
T  9172944 gccgtccctaagaattcggaggctcggctctgggaatgaaaaga 9172987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 467 - 510
Target Start/End: Original strand, 9180926 - 9180969
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaaga 510  Q
    |||||||||||||||||||||||| |||| ||||||||||||||    
T  9180926 gccgtccctaagaattcggaggctcggctctgggaatgaaaaga 9180969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 470 - 532
Target Start/End: Complemental strand, 19955905 - 19955843
Alignment:
Q  470 gtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    ||||||||||||||||||||| |||| || ||||||||||| | |||| ||||||| ||||||    
T  19955905 gtccctaagaattcggaggctcggctctgagaatgaaaagaggccagtgataaaatcaaaacg 19955843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 467 - 532
Target Start/End: Complemental strand, 14146491 - 14146426
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    ||||||||| |||||||||||||| |||| | |||||||||||| | |||| ||||||| ||||||    
T  14146491 gccgtccctgagaattcggaggctcggctcttggaatgaaaagaggccagtgataaaatcaaaacg 14146426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 467 - 532
Target Start/End: Original strand, 22865382 - 22865447
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    ||||||||| |||||||||||||  |||| |||||||||||||| |||| | ||||||| ||||||    
T  22865382 gccgtccctgagaattcggaggcacggctctgggaatgaaaagaggtcaatgataaaatcaaaacg 22865447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 469 - 532
Target Start/End: Complemental strand, 16140244 - 16140181
Alignment:
Q  469 cgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    ||||||| |||||||||||||| |||| |||||||||||||| | | || ||||||| ||||||    
T  16140244 cgtccctgagaattcggaggctcggctctgggaatgaaaagaggccggtgataaaatcaaaacg 16140181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 532
Target Start/End: Complemental strand, 5027742 - 5027677
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    ||||||||| |||||||||||||| | ||  ||||||||||||| | |||| ||||||| ||||||    
T  5027742 gccgtccctgagaattcggaggctcgactcggggaatgaaaagaggccagtgataaaatcaaaacg 5027677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 532
Target Start/End: Complemental strand, 5316871 - 5316806
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    ||||||||| |||||| ||||||| | | || |||||||||||| |||||| ||||||| ||||||    
T  5316871 gccgtccctgagaatttggaggctcgaccttaggaatgaaaagaggtcagtgataaaatcaaaacg 5316806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 467 - 531
Target Start/End: Original strand, 27906650 - 27906714
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaac 531  Q
    ||||||||| |||||||||||||| |||| ||  |||||||||| | |||| ||||||| |||||    
T  27906650 gccgtccctgagaattcggaggctcggctctgaaaatgaaaagaggccagtgataaaatcaaaac 27906714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 480 - 532
Target Start/End: Original strand, 41697072 - 41697124
Alignment:
Q  480 attcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    ||||||| ||| |||| |||||||||||||| |||||| ||||||| ||||||    
T  41697072 attcggaagctcggctctgggaatgaaaagaggtcagtgataaaatcaaaacg 41697124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 467 - 531
Target Start/End: Complemental strand, 44655932 - 44655868
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaac 531  Q
    ||||||||| |||||||||||||| |||| ||| ||||||||||   |||| ||||||| |||||    
T  44655932 gccgtccctgagaattcggaggctcggctctggaaatgaaaagagaccagtgataaaatcaaaac 44655868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 18 - 462
Target Start/End: Complemental strand, 29307 - 28847
Alignment:
Q  18 tttttaagcaaaaatccaccttgcatatagtagtatgttttgattagatgcacattttattttatttttcccaaatgagattcacattattttagagtta 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||    
T  29307 tttttaagcaaaaatccaccttgcatatagtagtatgttttgattagatgcacattttattttattttttccaaatgagattcacattattttagaatta 29208  T
Q  118 atcctatcc---nnnnnnnnntatggtttagagttnnnnnnnnttaaaatagcagtaatta-------tacacggcacagactactattacttctggaat 207  Q
    |||||||||            ||| || |||||||        ||||||||||||||||||       ||||||||| ||||| ||||||||||| ||||    
T  29207 atcctatcccaaaaaaaaaaatatagtatagagtt-aaaaaaattaaaatagcagtaattactaattgtacacggcagagacttctattacttcttgaat 29109  T
Q  208 tttcaaagaatagtcaatatgcttggttacaattccgagaaatacacaccactctaaacaataatctctccaactagtttatattctgtnnnnnnnnntc 307  Q
    ||| ||||||||||||||||| |||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||| |||             ||    
T  29108 ttttaaagaatagtcaatatgtttggttacaattccaagaaatacacaccattgtaaacaataatctctccaactagtttacatt---aaaaaaaaaatc 29012  T
Q  308 atcaaacactttccccatctctttctatcctttccacatgtgacctttccctttcacattctac----------nnnnnnnnnncttcttcttctacatc 397  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||                    ||||||||||||||||    
T  29011 atcaaacactttccccatctctttctatcctttccgcatgcgacctttccctttcatattctacttttttttcttcttcttcttcttcttcttctacatc 28912  T
Q  398 aatatgtattgttatcatgtcaaagatgcaattaaaatagtgaaagcaaaaaccacttaagatga 462  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  28911 aatatgtattattatcatgtcaaagatgcaattaaaatagtgaaagcataaaccacttaagatga 28847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 9e-19; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 382 - 454
Target Start/End: Original strand, 12340918 - 12340990
Alignment:
Q  382 cttcttcttctacatcaatatgtattgttatcatgtcaaagatgcaattaaaatagtgaaagcaaaaaccact 454  Q
    |||||||||||| ||||||||||| |||||||||||||||||||||| |||||| ||||||| | ||||||||    
T  12340918 cttcttcttctatatcaatatgtaatgttatcatgtcaaagatgcaactaaaatggtgaaagtataaaccact 12340990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 74 - 121
Target Start/End: Original strand, 12340600 - 12340647
Alignment:
Q  74 ttattttatttttcccaaatgagattcacattattttagagttaatcc 121  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||    
T  12340600 ttattttatttttcccaactgagattcacattattttagagttaatcc 12340647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 467 - 532
Target Start/End: Complemental strand, 24410619 - 24410554
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    |||||||||||||||||||||||| || |||||||||||||||| | |||| ||||||| ||||||    
T  24410619 gccgtccctaagaattcggaggctcggttttgggaatgaaaagaggccagtgataaaatcaaaacg 24410554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 467 - 532
Target Start/End: Complemental strand, 26716309 - 26716244
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    ||||||||||||||||||  |||| ||||||||||||||||||| |||||| ||||||| ||||||    
T  26716309 gccgtccctaagaattcgttggctcggctttgggaatgaaaagaggtcagtgataaaatcaaaacg 26716244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 467 - 532
Target Start/End: Original strand, 10762489 - 10762554
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    |||||||||||||||| |||||||  ||| |||||||||||||| | |||| ||||||||||||||    
T  10762489 gccgtccctaagaatttggaggctcagctctgggaatgaaaagaggccagtgataaaattaaaacg 10762554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 467 - 532
Target Start/End: Original strand, 27506663 - 27506728
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    |||||||||||||||||||||||| |||| || ||||||||||| | |||| ||||||| ||||||    
T  27506663 gccgtccctaagaattcggaggctcggctctgagaatgaaaagaggccagtgataaaatcaaaacg 27506728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 467 - 531
Target Start/End: Complemental strand, 3155397 - 3155333
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaac 531  Q
    ||||||||| |||||||||||||| ||||||   |||||||||| |||||| |||||||||||||    
T  3155397 gccgtccctgagaattcggaggctcggctttaaaaatgaaaagaggtcagtgataaaattaaaac 3155333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 467 - 531
Target Start/End: Complemental strand, 4506074 - 4506010
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaac 531  Q
    ||||||||| |||||||||||||| |||| ||| |||||||||| | |||| ||||||| |||||    
T  4506074 gccgtccctgagaattcggaggctcggctctggaaatgaaaagaggccagtgataaaatcaaaac 4506010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 467 - 531
Target Start/End: Complemental strand, 40636317 - 40636253
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaac 531  Q
    ||||||||| ||||||||||||||  ||| |||||||||||||| | |||| ||||||| |||||    
T  40636317 gccgtccctgagaattcggaggctcagctctgggaatgaaaagaggccagtgataaaatcaaaac 40636253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 530
Target Start/End: Complemental strand, 6965185 - 6965122
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaa 530  Q
    ||||||||| |||||||||||||| |||| ||| |||||||||| | |||| ||||||| ||||    
T  6965185 gccgtccctgagaattcggaggctcggctctggaaatgaaaagaggccagtgataaaatcaaaa 6965122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 158 - 269
Target Start/End: Original strand, 12340685 - 12340789
Alignment:
Q  158 ttaaaatagcagtaattatacacggcacagactactattacttctggaattttcaaagaatagtcaatatgcttggttacaa-ttccgagaaatacacac 256  Q
    ||||||||| ||||||| || |||| ||||||||||||| | ||||||| ||||||||       ||||||||| ||||||| |||| ||||||||||||    
T  12340685 ttaaaatagaagtaattgtagacggtacagactactattgc-tctggaactttcaaag-------aatatgcttagttacaacttccaagaaatacacac 12340776  T
Q  257 cactctaaacaat 269  Q
     |||||| |||||    
T  12340777 tactctatacaat 12340789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 6e-17; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 467 - 532
Target Start/End: Original strand, 16799244 - 16799309
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    |||||||||||||||||||||||| |||| |||||||||||||| |||||| ||||||| ||||||    
T  16799244 gccgtccctaagaattcggaggctcggctctgggaatgaaaagatgtcagtgataaaatcaaaacg 16799309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 467 - 532
Target Start/End: Original strand, 38869283 - 38869348
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    |||||||||||||||||||||||| |||| |||||||||||||| |||||| ||||||| ||||||    
T  38869283 gccgtccctaagaattcggaggctcggctctgggaatgaaaagaggtcagttataaaatcaaaacg 38869348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 467 - 532
Target Start/End: Original strand, 28822256 - 28822321
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    |||||||||||||||||||||| | ||||||||||||||||||| || ||| ||||||| ||||||    
T  28822256 gccgtccctaagaattcggaggttcggctttgggaatgaaaagaggttagtgataaaatcaaaacg 28822321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 467 - 532
Target Start/End: Original strand, 36187799 - 36187864
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    ||||||||| |||||||||||||| |||| |||||||||||||| |||||| ||||||| ||||||    
T  36187799 gccgtccctgagaattcggaggctcggctctgggaatgaaaagaggtcagtgataaaatcaaaacg 36187864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 471 - 525
Target Start/End: Original strand, 40389461 - 40389515
Alignment:
Q  471 tccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaat 525  Q
    |||||||||||||||||||| |||| |||||||||||||| |||||| |||||||    
T  40389461 tccctaagaattcggaggctcggctctgggaatgaaaagatgtcagtgataaaat 40389515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 467 - 532
Target Start/End: Complemental strand, 7671114 - 7671049
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    ||||||| |||||||||||||||| |||| |||||||||||||| | |||| ||||||| ||||||    
T  7671114 gccgtccttaagaattcggaggctcggctctgggaatgaaaagaggccagtgataaaatcaaaacg 7671049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 471 - 532
Target Start/End: Original strand, 16198717 - 16198778
Alignment:
Q  471 tccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    |||||||||||||||||||| |||| |||||||||||||| | |||| ||||||| ||||||    
T  16198717 tccctaagaattcggaggctcggctctgggaatgaaaagaggccagtgataaaatcaaaacg 16198778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 467 - 531
Target Start/End: Original strand, 15480010 - 15480074
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaac 531  Q
    ||||||||| |||||||||||||| |||| |||||||||||||| | |||| ||||||| |||||    
T  15480010 gccgtccctgagaattcggaggctcggctctgggaatgaaaagaggccagtgataaaatcaaaac 15480074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 467 - 532
Target Start/End: Complemental strand, 19523380 - 19523315
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    ||||||||| |||||||||||||| |||| ||||||||||||||   |||| ||||||| ||||||    
T  19523380 gccgtccctgagaattcggaggctcggctctgggaatgaaaagagaccagtgataaaatcaaaacg 19523315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 467 - 532
Target Start/End: Complemental strand, 27079193 - 27079128
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    ||||||||| |||||||||||||| |||| || ||||||||||| | |||| ||||||| ||||||    
T  27079193 gccgtccctgagaattcggaggctcggctctgagaatgaaaagaggccagtgataaaatcaaaacg 27079128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 468 - 532
Target Start/End: Complemental strand, 2275070 - 2275006
Alignment:
Q  468 ccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    |||||||| |||||||||||||| || | |||||||||||||| | |||| ||||||| ||||||    
T  2275070 ccgtccctgagaattcggaggctcggttctgggaatgaaaagaggccagtgataaaatcaaaacg 2275006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 472 - 532
Target Start/End: Complemental strand, 9364467 - 9364407
Alignment:
Q  472 ccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    |||||||||||||||||||  ||| |||||||||||||| | |||| ||||||| ||||||    
T  9364467 ccctaagaattcggaggctcagctctgggaatgaaaagaggccagtgataaaatcaaaacg 9364407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 532
Target Start/End: Complemental strand, 30854510 - 30854445
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    ||||||||| | |||| ||||||| |||| |||||||||||| | |||||  ||||||||||||||    
T  30854510 gccgtccctgataatttggaggctcggctctgggaatgaaaaaaggtcagcgataaaattaaaacg 30854445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 532
Target Start/End: Original strand, 31194532 - 31194597
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    ||||||||| | |||||||||||| |||| ||||||||||||||   |||| ||||||| ||||||    
T  31194532 gccgtccctgaaaattcggaggctcggctctgggaatgaaaagagaccagtgataaaatcaaaacg 31194597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 532
Target Start/End: Original strand, 31881352 - 31881417
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    ||||||||| | ||||  |||||| |||| |||||||||||||  |||||||||||||| ||||||    
T  31881352 gccgtccctgaaaatttagaggctcggctctgggaatgaaaagtggtcagtaataaaatcaaaacg 31881417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 471 - 531
Target Start/End: Original strand, 34756289 - 34756349
Alignment:
Q  471 tccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaac 531  Q
    ||||| |||||||||||||| |||| ||| |||||||||| | |||| ||||||| |||||    
T  34756289 tccctgagaattcggaggctcggctctggaaatgaaaagaggccagtgataaaatcaaaac 34756349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 467 - 532
Target Start/End: Original strand, 16882317 - 16882382
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    |||||||||||||||||||||||| |||| | ||||||||||||||||||| ||||||| ||||||    
T  16882317 gccgtccctaagaattcggaggctcggctctaggaatgaaaagaagtcagtgataaaatcaaaacg 16882382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 469 - 532
Target Start/End: Complemental strand, 40089708 - 40089645
Alignment:
Q  469 cgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    |||||||||||||||||||||| |||| | ||||||||||||||||||| ||||||| ||||||    
T  40089708 cgtccctaagaattcggaggctcggctcttggaatgaaaagaagtcagtgataaaatcaaaacg 40089645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 467 - 532
Target Start/End: Complemental strand, 34027764 - 34027699
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    |||||||||||||||||||||||| |||| |||||||||||||| | |||| ||||||| ||||||    
T  34027764 gccgtccctaagaattcggaggctcggctctgggaatgaaaagaggccagtgataaaatcaaaacg 34027699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 467 - 532
Target Start/End: Complemental strand, 54780964 - 54780899
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    ||||||||| ||||||||||||||||||| |||||||||||||| | |||| ||||||| ||||||    
T  54780964 gccgtccctgagaattcggaggcttggctctgggaatgaaaagaggccagtgataaaatcaaaacg 54780899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 469 - 532
Target Start/End: Original strand, 38352189 - 38352252
Alignment:
Q  469 cgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    |||||||||||||||||||||| |||| ||||||||||||||  ||||| ||||||| ||||||    
T  38352189 cgtccctaagaattcggaggctcggctctgggaatgaaaagagatcagtgataaaatcaaaacg 38352252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 470 - 532
Target Start/End: Original strand, 37777147 - 37777209
Alignment:
Q  470 gtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    |||||||| |||||||||||| |||| |||||||||||||| |||||| ||||||| ||||||    
T  37777147 gtccctaaaaattcggaggctcggctctgggaatgaaaagaggtcagtgataaaatcaaaacg 37777209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 467 - 532
Target Start/End: Complemental strand, 32128770 - 32128705
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    |||||||||||||||| ||||||| |||| |||||||||||| | |||||| ||||||| ||||||    
T  32128770 gccgtccctaagaatttggaggctcggctctgggaatgaaaaaaggtcagtgataaaatcaaaacg 32128705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 467 - 532
Target Start/End: Complemental strand, 32915571 - 32915506
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    ||||||||| |||||||||||||| |||| |||||||||||||| | |||| ||||||| ||||||    
T  32915571 gccgtccctgagaattcggaggctcggctctgggaatgaaaagaggccagtgataaaatcaaaacg 32915506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 467 - 532
Target Start/End: Original strand, 54083164 - 54083229
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    ||||||||||| |||||||||||| |||| || ||||||||||| |||||| ||||||| ||||||    
T  54083164 gccgtccctaaaaattcggaggctcggctctgagaatgaaaagaggtcagtgataaaatcaaaacg 54083229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 469 - 531
Target Start/End: Original strand, 34768498 - 34768560
Alignment:
Q  469 cgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaac 531  Q
    ||||||| |||||||||||||| ||||||||||||||||||| |  ||| ||||||| |||||    
T  34768498 cgtccctgagaattcggaggctcggctttgggaatgaaaagaggctagtgataaaatcaaaac 34768560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 474 - 532
Target Start/End: Original strand, 43455460 - 43455518
Alignment:
Q  474 ctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    ||||||||||||||||| | || |||||||||||||| |||||| ||||||| ||||||    
T  43455460 ctaagaattcggaggctcgactctgggaatgaaaagaggtcagtgataaaatcaaaacg 43455518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 467 - 532
Target Start/End: Complemental strand, 1105717 - 1105652
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    ||||||| | ||||||| |||||| |||| |||||||||||||| |||||| ||||||| ||||||    
T  1105717 gccgtccttgagaattcagaggctcggctctgggaatgaaaagaggtcagtgataaaatcaaaacg 1105652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 467 - 532
Target Start/End: Complemental strand, 16845206 - 16845142
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    |||||||||||||||||||||||| |||| ||| |||||||| ||| |||| ||||||| ||||||    
T  16845206 gccgtccctaagaattcggaggctcggctctggaaatgaaaa-aagccagtgataaaatcaaaacg 16845142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 467 - 531
Target Start/End: Original strand, 2790663 - 2790727
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaac 531  Q
    |||||| ||||||||||||||||| |||| ||||||||||||||   |||| ||||||| |||||    
T  2790663 gccgtctctaagaattcggaggctcggctctgggaatgaaaagagaccagtgataaaatcaaaac 2790727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 479 - 530
Target Start/End: Original strand, 23508443 - 23508494
Alignment:
Q  479 aattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaa 530  Q
    |||||||||||| ||||||||||||||||||| | |||| ||||||| ||||    
T  23508443 aattcggaggctcggctttgggaatgaaaagaggccagtgataaaatcaaaa 23508494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 510
Target Start/End: Complemental strand, 24969782 - 24969739
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaaga 510  Q
    |||||||||||||||||||||||| | || ||||||||||||||    
T  24969782 gccgtccctaagaattcggaggctcgactctgggaatgaaaaga 24969739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 530
Target Start/End: Complemental strand, 47129172 - 47129109
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaa 530  Q
    ||||||||| |||||||||||||| |||| ||| |||||||||| | |||| ||||||| ||||    
T  47129172 gccgtccctgagaattcggaggctcggctctggaaatgaaaagaggccagtgataaaatcaaaa 47129109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 477 - 530
Target Start/End: Original strand, 10428130 - 10428183
Alignment:
Q  477 agaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaa 530  Q
    |||||||||||||| |||| |||||||||||||| ||||||  |||||| ||||    
T  10428130 agaattcggaggctcggctctgggaatgaaaagaggtcagtgctaaaatcaaaa 10428183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 532
Target Start/End: Complemental strand, 10979088 - 10979023
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    |||||| || |||||||||||| || ||| |||||||||||||| || ||| ||||||| ||||||    
T  10979088 gccgtctctgagaattcggaggtttagctctgggaatgaaaagaggttagtgataaaatcaaaacg 10979023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 532
Target Start/End: Original strand, 16922249 - 16922314
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    ||||||||| |||||| ||||||| | |||||||||||||||||   |||| ||||||| ||||||    
T  16922249 gccgtccctgagaatttggaggctcgactttgggaatgaaaagagaccagtgataaaatcaaaacg 16922314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 467 - 531
Target Start/End: Complemental strand, 55255443 - 55255379
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaac 531  Q
    ||||||||| |||||||||||||| |||| ||  |||||||||| | |||| ||||||| |||||    
T  55255443 gccgtccctgagaattcggaggctcggctctgaaaatgaaaagaggccagtgataaaatcaaaac 55255379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 467 - 532
Target Start/End: Original strand, 34290558 - 34290623
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    ||||||| |||||||||||||||| |||| ||||||||||||||||||||| ||||||| ||||||    
T  34290558 gccgtccttaagaattcggaggctcggctctgggaatgaaaagaagtcagtgataaaatcaaaacg 34290623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 466 - 532
Target Start/End: Complemental strand, 37168552 - 37168486
Alignment:
Q  466 cgccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    ||||||||||||||||||||||||| |||| |||||||||||||| | |||| ||||||| ||||||    
T  37168552 cgccgtccctaagaattcggaggctcggctctgggaatgaaaagaggccagtgataaaatcaaaacg 37168486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 467 - 532
Target Start/End: Complemental strand, 21582956 - 21582891
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    ||||||||| |||||||||||||| ||||||||||||||||||| | |||| ||||||| ||||||    
T  21582956 gccgtccctgagaattcggaggctcggctttgggaatgaaaagaggccagtgataaaatcaaaacg 21582891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 467 - 532
Target Start/End: Complemental strand, 47467868 - 47467803
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    ||||||||| |||||||||||||| |||| |||||||||||||| |||||| ||||||| ||||||    
T  47467868 gccgtccctgagaattcggaggctcggctctgggaatgaaaagaggtcagtgataaaatcaaaacg 47467803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 467 - 531
Target Start/End: Original strand, 27078490 - 27078554
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaac 531  Q
    ||||||||| ||||||||||||||||||| ||| |||||||||| |||||| ||||||| |||||    
T  27078490 gccgtccctgagaattcggaggcttggctctggaaatgaaaagaggtcagtgataaaatcaaaac 27078554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 467 - 531
Target Start/End: Original strand, 27084287 - 27084351
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaac 531  Q
    ||||||||| ||||||||||||||||||| ||| |||||||||| |||||| ||||||| |||||    
T  27084287 gccgtccctgagaattcggaggcttggctctggaaatgaaaagaggtcagtgataaaatcaaaac 27084351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 467 - 525
Target Start/End: Original strand, 29620368 - 29620426
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaat 525  Q
    ||||||||| |||||||||||||| |||| |||||||||||||| |||||| |||||||    
T  29620368 gccgtccctgagaattcggaggctcggctctgggaatgaaaagaggtcagtgataaaat 29620426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 467 - 532
Target Start/End: Original strand, 8073261 - 8073326
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    ||||||||| |||||||||||||| |||| ||| |||||||||| |||||| ||||||| ||||||    
T  8073261 gccgtccctgagaattcggaggctcggctctggaaatgaaaagaggtcagtgataaaatcaaaacg 8073326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 467 - 532
Target Start/End: Original strand, 48720433 - 48720498
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    |||||||||||||||| ||||||| |||| |||||||||||||| || ||| ||||||| ||||||    
T  48720433 gccgtccctaagaattgggaggctcggctctgggaatgaaaagaggtaagtgataaaatcaaaacg 48720498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 467 - 532
Target Start/End: Original strand, 54407077 - 54407142
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    |||||||||||||||||||||||| |||| |||||||||||||| | | || ||||||| ||||||    
T  54407077 gccgtccctaagaattcggaggctcggctctgggaatgaaaagaggccggtgataaaatcaaaacg 54407142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 467 - 532
Target Start/End: Original strand, 43207161 - 43207226
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    |||||||||||||||| ||||||| |||| |||||||||||||| | |||| ||||| | ||||||    
T  43207161 gccgtccctaagaatttggaggctcggctctgggaatgaaaagaggccagtgataaattaaaaacg 43207226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 467 - 532
Target Start/End: Complemental strand, 44708660 - 44708595
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    ||||||||||||||||||||||||   || |||||||||||||| | |||| ||||||| ||||||    
T  44708660 gccgtccctaagaattcggaggctcaactctgggaatgaaaagaggccagtgataaaatcaaaacg 44708595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 467 - 532
Target Start/End: Original strand, 50939156 - 50939221
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    ||||||||||||||||||| |||| |||| || ||||||||||| | |||| ||||||| ||||||    
T  50939156 gccgtccctaagaattcgggggctcggctctgagaatgaaaagaggccagtgataaaatcaaaacg 50939221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 467 - 531
Target Start/End: Original strand, 36715946 - 36716010
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaac 531  Q
    ||||||||| |||||||||||||| |||| ||| |||||||||| | |||| ||||||| |||||    
T  36715946 gccgtccctgagaattcggaggctcggctctggaaatgaaaagaggccagtgataaaataaaaac 36716010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 467 - 531
Target Start/End: Original strand, 38681015 - 38681079
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaac 531  Q
    ||||||||| |||||||||||||| |||| ||| |||||||||| | |||| ||||||| |||||    
T  38681015 gccgtccctgagaattcggaggctcggctctggaaatgaaaagaggccagtgataaaatcaaaac 38681079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 467 - 531
Target Start/End: Original strand, 54619125 - 54619189
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaac 531  Q
    ||||||||| |||||||||||||| |||| ||| |||||||||||| || | ||||||| |||||    
T  54619125 gccgtccctgagaattcggaggctcggctctggaaatgaaaagaagccaatgataaaatcaaaac 54619189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 467 - 531
Target Start/End: Original strand, 50258546 - 50258610
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaac 531  Q
    ||||| ||| |||||||||||||| |||| |||||| |||||||  ||||| ||||||| |||||    
T  50258546 gccgttcctgagaattcggaggctcggctctgggaacgaaaagagatcagtgataaaatcaaaac 50258610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 467 - 532
Target Start/End: Complemental strand, 1523 - 1458
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    ||||||||| |||||||||||||| |||| |||||||||||||| |||||| ||||||| ||||||    
T  1523 gccgtccctgagaattcggaggctcggctctgggaatgaaaagaggtcagtgataaaatcaaaacg 1458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 470 - 531
Target Start/End: Complemental strand, 26254171 - 26254110
Alignment:
Q  470 gtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaac 531  Q
    |||||| |||||||||||||| ||||||||||||||||||| |||||| ||||||| |||||    
T  26254171 gtccctgagaattcggaggctcggctttgggaatgaaaagaggtcagtgataaaatcaaaac 26254110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 467 - 532
Target Start/End: Complemental strand, 29077400 - 29077335
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    ||||||||| |||||||||||||| |||| |||||||||||||| |||||| ||||||| ||||||    
T  29077400 gccgtccctgagaattcggaggctcggctctgggaatgaaaagaggtcagtgataaaatcaaaacg 29077335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 462 - 525
Target Start/End: Original strand, 8171456 - 8171519
Alignment:
Q  462 acaacgccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaat 525  Q
    |||| ||||||||| |||||||||||||| |||| |||||||||||||| |||||| |||||||    
T  8171456 acaaggccgtccctgagaattcggaggctcggctctgggaatgaaaagaggtcagtgataaaat 8171519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 467 - 532
Target Start/End: Original strand, 10329331 - 10329396
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    ||||| |||||||||||||||||| |||| |||||||||||||| | |||| ||||||| ||||||    
T  10329331 gccgttcctaagaattcggaggctcggctctgggaatgaaaagaggccagtgataaaatcaaaacg 10329396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 467 - 532
Target Start/End: Original strand, 12596211 - 12596276
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    ||||||||| |||||||||||||| |||| |||||||||||||| | |||| ||||||| ||||||    
T  12596211 gccgtccctgagaattcggaggctcggctctgggaatgaaaagaggccagtgataaaatcaaaacg 12596276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 467 - 532
Target Start/End: Original strand, 20091201 - 20091266
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    |||||||||||||||||||||||| |||| || ||||||||||| | |||| ||||||| ||||||    
T  20091201 gccgtccctaagaattcggaggctcggctctgagaatgaaaagaggccagtgataaaatcaaaacg 20091266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 467 - 532
Target Start/End: Complemental strand, 25010607 - 25010542
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    |||||||||||||||||||||||| |||| ||| |||||||||| | |||| ||||||| ||||||    
T  25010607 gccgtccctaagaattcggaggctcggctctggaaatgaaaagaggccagtgataaaatcaaaacg 25010542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 467 - 530
Target Start/End: Original strand, 18776687 - 18776750
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaa 530  Q
    ||||||||| |||||||||||||| |||| ||| |||||||||| |||||| ||||||| ||||    
T  18776687 gccgtccctgagaattcggaggctcggctctggaaatgaaaagaggtcagtgataaaatcaaaa 18776750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 469 - 532
Target Start/End: Original strand, 24525605 - 24525668
Alignment:
Q  469 cgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    |||||||||||||||||||||| |||| |||||||||||||| | | || ||||||| ||||||    
T  24525605 cgtccctaagaattcggaggctcggctctgggaatgaaaagaggcctgtgataaaatcaaaacg 24525668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 469 - 531
Target Start/End: Original strand, 23550994 - 23551056
Alignment:
Q  469 cgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaac 531  Q
    |||||||||||||||||||||| |||| || ||||||||||| | |||| ||||||| |||||    
T  23550994 cgtccctaagaattcggaggctcggctctgagaatgaaaagaggccagtgataaaatcaaaac 23551056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 467 - 532
Target Start/End: Original strand, 47984889 - 47984954
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    ||||||||||||||||||  |||| |||| |||||||||||||| | |||| ||||||| ||||||    
T  47984889 gccgtccctaagaattcgttggctcggctctgggaatgaaaagatgccagtgataaaatcaaaacg 47984954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 467 - 532
Target Start/End: Original strand, 48983760 - 48983825
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    |||||||||||||||||||||||| |||| || ||||||||||| | || | ||||||| ||||||    
T  48983760 gccgtccctaagaattcggaggctcggctctgagaatgaaaagaggccaatgataaaatcaaaacg 48983825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 532
Target Start/End: Complemental strand, 8239867 - 8239802
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    |||||||||||||||| ||||||| |||| ||| |||||||||| | || | ||||||| ||||||    
T  8239867 gccgtccctaagaatttggaggctcggctctggaaatgaaaagaggccaatgataaaatgaaaacg 8239802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 467 - 532
Target Start/End: Original strand, 27788612 - 27788677
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    |||||||||||||||||||||||| |||| |||||||||||||| | |||| ||||||| ||||||    
T  27788612 gccgtccctaagaattcggaggctcggctctgggaatgaaaagaggccagtgataaaatcaaaacg 27788677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 467 - 532
Target Start/End: Complemental strand, 17354138 - 17354073
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    |||||||||||||||||||||||| | || | |||||||||||| |||||| ||||||| ||||||    
T  17354138 gccgtccctaagaattcggaggctcgactcttggaatgaaaagaggtcagtgataaaatcaaaacg 17354073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 469 - 532
Target Start/End: Original strand, 20711644 - 20711707
Alignment:
Q  469 cgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    ||||||| |||||||||||||| || | |||||||||||||| |||||| ||||||| ||||||    
T  20711644 cgtccctgagaattcggaggctcggttctgggaatgaaaagaggtcagtcataaaatcaaaacg 20711707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 467 - 532
Target Start/End: Original strand, 30832447 - 30832512
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    ||||||||| |||||||| ||||| |||| |||||||||||||| | |||| ||||||| ||||||    
T  30832447 gccgtccctgagaattcgaaggctcggctctgggaatgaaaagaggccagtgataaaatcaaaacg 30832512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 467 - 531
Target Start/End: Original strand, 13727321 - 13727385
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaac 531  Q
    ||||||||| |||||||||||||| |||| ||| |||||||||| | |||| ||||||| |||||    
T  13727321 gccgtccctgagaattcggaggctcggctctggaaatgaaaagaggccagtgataaaatcaaaac 13727385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 467 - 531
Target Start/End: Complemental strand, 21280729 - 21280665
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaac 531  Q
    ||||||||| |||||||||||||| |||| ||| |||||||||| | |||| ||||||| |||||    
T  21280729 gccgtccctgagaattcggaggctcggctctggaaatgaaaagaggccagtgataaaatcaaaac 21280665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 532
Target Start/End: Original strand, 24710918 - 24710983
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    ||||||||| ||||||||||||||  |||  ||||||||||||| || ||| ||||||| ||||||    
T  24710918 gccgtccctgagaattcggaggctcagctcagggaatgaaaagaggttagtgataaaatcaaaacg 24710983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 532
Target Start/End: Original strand, 27314101 - 27314166
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    ||||||||| | |||||||||||| | || |||||||||||||| | |||| ||||||| ||||||    
T  27314101 gccgtccctgaaaattcggaggctcgactctgggaatgaaaagaggccagtgataaaatcaaaacg 27314166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 467 - 532
Target Start/End: Complemental strand, 106719 - 106654
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    |||||||||||||||| ||||||| |||| |||||||||||||| | |||| ||||||| ||||||    
T  106719 gccgtccctaagaatttggaggctcggctctgggaatgaaaagaggccagtgataaaatcaaaacg 106654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 467 - 532
Target Start/End: Complemental strand, 183240 - 183175
Alignment:
Q  467 gccgtccctaagaattcggaggcttggctttgggaatgaaaagaagtcagtaataaaattaaaacg 532  Q
    ||||||||| | ||||| |||||| |||| |||||||||||||| | |||| ||||||||||||||    
T  183240 gccgtccctgaaaattcagaggctcggctctgggaatgaaaagaggccagtgataaaattaaaacg 183175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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