View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8900_low_35 (Length: 323)
Name: NF8900_low_35
Description: NF8900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8900_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 16 - 308
Target Start/End: Complemental strand, 2886560 - 2886268
Alignment:
| Q |
16 |
acatcattatagaaaactgagatcccagccctaacaataatcaagactacacccaaataatattaaataaaatcaaaatgcattataaatcactaatgaa |
115 |
Q |
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| T |
2886560 |
acatcattatagaaaactgagatcccagccctaacaataatcaagactacacccaaataatattaaataaaatcaaaatgcattataaatcactaatgaa |
2886461 |
T |
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| Q |
116 |
ctagttcaaacacataaaagtagcatgtttatattgagttttcacgagtggtatgaaaaagatagatcacctatacgcggtaattcaacttcttgggtag |
215 |
Q |
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| T |
2886460 |
ctagttcaaacacataaaagtagcatgtttatattgagttttcacgagtggtatgaaaaagatagatcacctatacgtggtaattcaacttcttgggtag |
2886361 |
T |
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| Q |
216 |
tgccatttgttgtgctgtcttctgattcttcatttattgttgcttgtggcttgtcaaatgctgtaaaaatcatgcatgttagttaatgaaatg |
308 |
Q |
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| T |
2886360 |
tgccatttgttgtgctgtcttctgattcttcatttattgttgcttgtggcttgtcaaatgctgtaaaaatcatgcatgttagtttatgaaatg |
2886268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 138 - 303
Target Start/End: Original strand, 2897983 - 2898148
Alignment:
| Q |
138 |
gcatgtttatattgagttttcacgagtggtatgaaaaagatagatcacctatacgcggtaattcaacttcttgggtagtgccatttgttgtgctgtcttc |
237 |
Q |
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| T |
2897983 |
gcatgtttatattgagttttcatgaatggtatgaaaaagattcataacctatgcgcggtaattcaacttcttggagagtgccatttgttatgctgtcttc |
2898082 |
T |
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| Q |
238 |
tgattcttcatttattgttgcttgtggcttgtcaaatgctgtaaaaatcatgcatgttagttaatg |
303 |
Q |
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| T |
2898083 |
tgattcttcatttatttttgcttgtggcttgtcaaatgctgtaaaaatcatgcatgttagtcaatg |
2898148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 277
Target Start/End: Complemental strand, 2876307 - 2876267
Alignment:
| Q |
237 |
ctgattcttcatttattgttgcttgtggcttgtcaaatgct |
277 |
Q |
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| T |
2876307 |
ctgattcttcttttattgtggcttgtggcttgtcaagtgct |
2876267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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