View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8900_low_38 (Length: 323)

Name: NF8900_low_38
Description: NF8900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8900_low_38
NF8900_low_38
[»] chr7 (10 HSPs)
chr7 (163-323)||(32571395-32571554)
chr7 (120-183)||(26017320-26017383)
chr7 (113-182)||(17222500-17222568)
chr7 (120-177)||(23732062-23732119)
chr7 (1-44)||(32571640-32571684)
chr7 (131-183)||(39090488-39090540)
chr7 (120-179)||(24533551-24533610)
chr7 (121-183)||(2623003-2623065)
chr7 (121-179)||(44482530-44482588)
chr7 (121-183)||(46025703-46025765)
[»] chr2 (14 HSPs)
chr2 (112-183)||(13113413-13113484)
chr2 (127-183)||(11931268-11931324)
chr2 (136-183)||(20036786-20036833)
chr2 (113-183)||(7581755-7581825)
chr2 (120-177)||(17118279-17118336)
chr2 (110-183)||(36868408-36868481)
chr2 (120-183)||(15920263-15920326)
chr2 (129-183)||(4878396-4878450)
chr2 (121-183)||(16136489-16136551)
chr2 (121-183)||(43473793-43473855)
chr2 (120-177)||(17094975-17095032)
chr2 (110-183)||(38384114-38384187)
chr2 (131-180)||(44441779-44441828)
chr2 (127-183)||(18141143-18141199)
[»] chr5 (11 HSPs)
chr5 (120-185)||(9196677-9196742)
chr5 (127-183)||(4726665-4726721)
chr5 (112-179)||(32309898-32309965)
chr5 (110-183)||(11734493-11734566)
chr5 (127-183)||(5378698-5378754)
chr5 (127-178)||(28423703-28423754)
chr5 (121-179)||(18654193-18654251)
chr5 (121-183)||(39179493-39179555)
chr5 (127-177)||(39308421-39308471)
chr5 (110-183)||(42781401-42781474)
chr5 (131-183)||(40775161-40775213)
[»] chr4 (13 HSPs)
chr4 (127-183)||(34668582-34668638)
chr4 (120-183)||(46716556-46716619)
chr4 (121-183)||(24100544-24100606)
chr4 (121-183)||(24611446-24611508)
chr4 (121-183)||(27091119-27091181)
chr4 (120-177)||(6408834-6408891)
chr4 (120-177)||(50274378-50274435)
chr4 (126-183)||(56236479-56236536)
chr4 (127-183)||(9549828-9549884)
chr4 (121-185)||(13965954-13966018)
chr4 (155-183)||(26674804-26674832)
chr4 (110-182)||(27395216-27395288)
chr4 (127-179)||(44374941-44374993)
[»] chr8 (12 HSPs)
chr8 (120-179)||(5457460-5457519)
chr8 (110-183)||(2234126-2234199)
chr8 (110-183)||(30026538-30026611)
chr8 (144-183)||(2629326-2629365)
chr8 (120-179)||(8054474-8054533)
chr8 (121-183)||(7579511-7579573)
chr8 (129-183)||(31712736-31712790)
chr8 (110-179)||(5526202-5526271)
chr8 (110-183)||(14600354-14600427)
chr8 (127-176)||(32413186-32413235)
chr8 (121-185)||(24790824-24790888)
chr8 (127-183)||(32104499-32104555)
[»] chr6 (7 HSPs)
chr6 (120-183)||(5545069-5545132)
chr6 (121-183)||(2488533-2488595)
chr6 (121-183)||(5146337-5146399)
chr6 (121-183)||(12481027-12481089)
chr6 (121-183)||(15589773-15589835)
chr6 (110-183)||(30813457-30813530)
chr6 (131-183)||(8644628-8644680)
[»] chr3 (8 HSPs)
chr3 (110-184)||(55455262-55455336)
chr3 (114-179)||(25111829-25111894)
chr3 (126-183)||(48652105-48652162)
chr3 (113-183)||(534390-534460)
chr3 (121-183)||(33637805-33637867)
chr3 (110-183)||(13701658-13701731)
chr3 (120-176)||(20200727-20200783)
chr3 (120-176)||(20202909-20202965)
[»] scaffold0536 (1 HSPs)
scaffold0536 (110-183)||(3295-3368)
[»] chr1 (10 HSPs)
chr1 (127-183)||(44562411-44562467)
chr1 (127-182)||(28213449-28213504)
chr1 (121-183)||(12872017-12872079)
chr1 (129-183)||(12967395-12967449)
chr1 (121-183)||(15390900-15390962)
chr1 (120-185)||(10304973-10305038)
chr1 (110-183)||(15790924-15790997)
chr1 (110-183)||(25689501-25689574)
chr1 (131-183)||(13969302-13969354)
chr1 (131-183)||(46589548-46589600)
[»] scaffold0722 (1 HSPs)
scaffold0722 (120-183)||(5188-5251)
[»] scaffold0045 (1 HSPs)
scaffold0045 (127-181)||(48015-48069)
[»] scaffold0024 (1 HSPs)
scaffold0024 (120-176)||(36913-36969)


Alignment Details
Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 163 - 323
Target Start/End: Complemental strand, 32571554 - 32571395
Alignment:
Q  163 atatcatttatttttgtcaaatacattttttattgaaagacaacgatttaaaattnnnnnnnnnntcatcattttccaataagacatttcgatatttgtt 262  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||| |||||||||||||| |||||||||    
T  32571554 atatcatttatttttgtcaaatacattttttattgaaagacaacgatttaaaat-aaaaaaaaattcatcatttttcaataagacatttctatatttgtt 32571456  T
Q  263 tttcttaatcaatgtcttaaaagatcctctttaatattttcctaaactttttaagaaaata 323  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32571455 tttcttaatcaatgtcttaaaagatcctctttaatattttcctaaactttttaagaaaata 32571395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 120 - 183
Target Start/End: Complemental strand, 26017383 - 26017320
Alignment:
Q  120 aatttatattatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    ||||||||||||||| ||||| | |||||| |||| ||||| ||||||||||||||||||||||    
T  26017383 aatttatattatatcgatgtactctatcaatttgaatgaatgaatatcatttatttttgtcaaa 26017320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 182
Target Start/End: Original strand, 17222500 - 17222568
Alignment:
Q  113 gactttcaatttatattatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaa 182  Q
    |||||||||||| ||||||||| ||||| | ||||||||||| |||||  ||||||||||||||||||||    
T  17222500 gactttcaattt-tattatatccatgtactctatcaacttgaatgaattcatatcatttatttttgtcaa 17222568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 177
Target Start/End: Complemental strand, 23732119 - 23732062
Alignment:
Q  120 aatttatattatatcaatgtagtttatcaacttgattgaataaatatcatttattttt 177  Q
    |||||| |||||||||||||| |||||||| || | ||||| ||||||||||||||||    
T  23732119 aatttacattatatcaatgtactttatcaatttaaatgaatgaatatcatttattttt 23732062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 32571684 - 32571640
Alignment:
Q  1 attacagagacttgaatataa-tcatacttgtaggcattatgacc 44  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||    
T  32571684 attacagagacttgaatataaatcatacttgtaggcataatgacc 32571640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 39090488 - 39090540
Alignment:
Q  131 tatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    |||||| ||| |||||||| |||| ||||| ||||||||||||||||||||||    
T  39090488 tatcaacgtactttatcaatttgaatgaatgaatatcatttatttttgtcaaa 39090540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 179
Target Start/End: Complemental strand, 24533610 - 24533551
Alignment:
Q  120 aatttatattatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgt 179  Q
    ||||| ||||||||  ||||| | |||||| ||||||||||||||||| |||||||||||    
T  24533610 aatttgtattatattgatgtactctatcaatttgattgaataaatatcttttatttttgt 24533551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 183
Target Start/End: Original strand, 2623003 - 2623065
Alignment:
Q  121 atttatattatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    |||||||||||||  ||||| | |||||| |||| ||||| |||||| |||||||||||||||    
T  2623003 atttatattatatagatgtactctatcaatttgaatgaatgaatatcgtttatttttgtcaaa 2623065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 179
Target Start/End: Complemental strand, 44482588 - 44482530
Alignment:
Q  121 atttatattatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgt 179  Q
    |||||||||||||| ||||| | |||||| |||| ||||| |||||| |||||||||||    
T  44482588 atttatattatatcgatgtactctatcaatttgaatgaatgaatatcgtttatttttgt 44482530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 183
Target Start/End: Complemental strand, 46025765 - 46025703
Alignment:
Q  121 atttatattatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    |||| |||| |||| ||||| |||||||| |||| ||||| |||||| |||||||||||||||    
T  46025765 atttgtattgtatcgatgtactttatcaatttgaatgaatgaatatcgtttatttttgtcaaa 46025703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 112 - 183
Target Start/End: Original strand, 13113413 - 13113484
Alignment:
Q  112 cgactttcaatttatattatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    ||||||| ||||||||||||||| ||||| | |||||| || | |||||||||||| |||||||||||||||    
T  13113413 cgactttgaatttatattatatcgatgtattctatcaatttaaatgaataaatatcgtttatttttgtcaaa 13113484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 11931268 - 11931324
Alignment:
Q  127 attatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    |||||||| ||||| |||||||| |||| ||||| ||||||||||||||||||||||    
T  11931268 attatatcgatgtactttatcaatttgaatgaatgaatatcatttatttttgtcaaa 11931324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 183
Target Start/End: Original strand, 20036786 - 20036833
Alignment:
Q  136 atgtagtttatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    |||||||||||||| |||| ||||||||| ||||||||||||||||||    
T  20036786 atgtagtttatcaatttgaatgaataaatctcatttatttttgtcaaa 20036833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 183
Target Start/End: Complemental strand, 7581825 - 7581755
Alignment:
Q  113 gactttcaatttatattatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    |||||| ||||| | || |||| || || |||||||| |||| ||||||||||||||||||||||||||||    
T  7581825 gacttttaatttgttttgtatcgatatactttatcaatttgaatgaataaatatcatttatttttgtcaaa 7581755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 120 - 177
Target Start/End: Complemental strand, 17118336 - 17118279
Alignment:
Q  120 aatttatattatatcaatgtagtttatcaacttgattgaataaatatcatttattttt 177  Q
    ||||| ||||||||| ||| | |||||||| |||| ||||||||||||||||||||||    
T  17118336 aatttgtattatatccatgaactttatcaatttgaatgaataaatatcatttattttt 17118279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 36868408 - 36868481
Alignment:
Q  110 agcgactttcaatttatattatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    ||||| ||| ||||||||||||||| || || | |||||| |||| ||||| |||||| |||||||||||||||    
T  36868408 agcgaatttaaatttatattatatcgatatactctatcaatttgaatgaatgaatatcgtttatttttgtcaaa 36868481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 183
Target Start/End: Original strand, 15920263 - 15920326
Alignment:
Q  120 aatttatattatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    ||||| |||| |||| ||||| | |||||| |||| ||||| ||||||||||||||||||||||    
T  15920263 aatttgtattgtatcgatgtactctatcaatttgaatgaatgaatatcatttatttttgtcaaa 15920326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 183
Target Start/End: Complemental strand, 4878450 - 4878396
Alignment:
Q  129 tatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    |||||| ||||| | |||||| |||| ||||| ||||||||||||||||||||||    
T  4878450 tatatcgatgtactctatcaatttgaatgaatgaatatcatttatttttgtcaaa 4878396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 183
Target Start/End: Original strand, 16136489 - 16136551
Alignment:
Q  121 atttatattatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    |||| ||||||||| ||||| | |||||| |||| ||||| |||||| |||||||||||||||    
T  16136489 atttgtattatatcgatgtactctatcaatttgaatgaatgaatatcgtttatttttgtcaaa 16136551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 183
Target Start/End: Complemental strand, 43473855 - 43473793
Alignment:
Q  121 atttatattatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    |||||||||||||||||||| | |||| | |||| ||||| |||||| |||| ||||||||||    
T  43473855 atttatattatatcaatgtattatatcgatttgaatgaatgaatatcgtttacttttgtcaaa 43473793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 177
Target Start/End: Complemental strand, 17095032 - 17094975
Alignment:
Q  120 aatttatattatatcaatgtagtttatcaacttgattgaataaatatcatttattttt 177  Q
    ||||| ||||||||| | | | |||||||| |||| ||||||||||||||||||||||    
T  17095032 aatttgtattatatccacgaactttatcaatttgaatgaataaatatcatttattttt 17094975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 183
Target Start/End: Complemental strand, 38384187 - 38384114
Alignment:
Q  110 agcgactttcaatttatattatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    ||||| ||| ||||| |||| |||| ||||  |||||||| |||| ||||| |||||| |||||||||||||||    
T  38384187 agcgaatttgaatttgtattgtatcgatgtgctttatcaatttgaatgaatgaatatcgtttatttttgtcaaa 38384114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 180
Target Start/End: Original strand, 44441779 - 44441828
Alignment:
Q  131 tatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtc 180  Q
    |||||||||| | |||||| |||| | |||||||||||||||||||||||    
T  44441779 tatcaatgtattctatcaatttgaatcaataaatatcatttatttttgtc 44441828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 18141199 - 18141143
Alignment:
Q  127 attatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    |||| ||| ||||| | |||||| |||| ||||| ||||||||||||||||||||||    
T  18141199 attacatcgatgtactctatcaatttgaatgaatgaatatcatttatttttgtcaaa 18141143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 9196742 - 9196677
Alignment:
Q  120 aatttatattatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaata 185  Q
    ||||||||||||||||||||| | |||||| |||| ||||| |||||| ||||||||||| |||||    
T  9196742 aatttatattatatcaatgtactctatcaatttgaatgaatgaatatcgtttatttttgtaaaata 9196677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 4726721 - 4726665
Alignment:
Q  127 attatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    |||||||||||||| | |||||| |||| ||||| ||||||||||||||||||||||    
T  4726721 attatatcaatgtactctatcaatttgaatgaatgaatatcatttatttttgtcaaa 4726665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 112 - 179
Target Start/End: Original strand, 32309898 - 32309965
Alignment:
Q  112 cgactttcaatttatattatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgt 179  Q
    ||||||| ||||||||||||||| ||||| | |||||| |||| ||||| |||||| |||||||||||    
T  32309898 cgactttgaatttatattatatcgatgtactctatcaatttgaatgaatcaatatcgtttatttttgt 32309965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 110 - 183
Target Start/End: Complemental strand, 11734566 - 11734493
Alignment:
Q  110 agcgactttcaatttatattatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    ||||| ||| ||||| |||| |||| ||||| |||||||| |||| ||||| |||||| |||||||||||||||    
T  11734566 agcgaatttgaatttgtattgtatcgatgtactttatcaatttgaatgaatgaatatcgtttatttttgtcaaa 11734493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 5378698 - 5378754
Alignment:
Q  127 attatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    |||||||| ||||| | |||||| |||| ||||| ||||||||||||||||||||||    
T  5378698 attatatcgatgtactctatcaatttgaatgaatgaatatcatttatttttgtcaaa 5378754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 178
Target Start/End: Complemental strand, 28423754 - 28423703
Alignment:
Q  127 attatatcaatgtagtttatcaacttgattgaataaatatcatttatttttg 178  Q
    |||||||||||||| | |||||| |||| ||||| |||||||||||||||||    
T  28423754 attatatcaatgtactatatcaatttgaatgaatgaatatcatttatttttg 28423703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 179
Target Start/End: Original strand, 18654193 - 18654251
Alignment:
Q  121 atttatattatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgt 179  Q
    ||||||||| |||||||||||| |||||| |||| ||||| ||||||  ||||||||||    
T  18654193 atttatattgtatcaatgtagtctatcaatttgaatgaatgaatatcgcttatttttgt 18654251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 183
Target Start/End: Complemental strand, 39179555 - 39179493
Alignment:
Q  121 atttatattatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    |||| |||| |||| ||||| |||||||| |||| ||||| |||||| |||||||||||||||    
T  39179555 atttgtattgtatcgatgtactttatcaatttgaatgaatgaatatcgtttatttttgtcaaa 39179493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 177
Target Start/End: Complemental strand, 39308471 - 39308421
Alignment:
Q  127 attatatcaatgtagtttatcaacttgattgaataaatatcatttattttt 177  Q
    |||||||| ||||| |||||||| |||| ||||| ||||||||||||||||    
T  39308471 attatatcgatgtactttatcaaattgaatgaatgaatatcatttattttt 39308421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 42781401 - 42781474
Alignment:
Q  110 agcgactttcaatttatattatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    ||||||||| ||||| |||| |||| ||| | | |||||| |||| | |||||||||| |||||||||||||||    
T  42781401 agcgactttgaatttgtattgtatcgatgcactctatcaatttgaataaataaatatcgtttatttttgtcaaa 42781474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 40775161 - 40775213
Alignment:
Q  131 tatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    |||| ||||| | |||||| |||| ||||| ||||||||||||||||||||||    
T  40775161 tatcgatgtactctatcaatttgaatgaatgaatatcatttatttttgtcaaa 40775213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000007; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 34668582 - 34668638
Alignment:
Q  127 attatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    |||||||| ||||| |||||||| || | ||||||||||||||||||||||||||||    
T  34668582 attatatcgatgtactttatcaatttaaatgaataaatatcatttatttttgtcaaa 34668638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 183
Target Start/End: Complemental strand, 46716619 - 46716556
Alignment:
Q  120 aatttatattatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    |||||| |||||||| ||||| | |||||| |||| ||||| ||||||||||||||||||||||    
T  46716619 aatttacattatatcgatgtactatatcaatttgaatgaatgaatatcatttatttttgtcaaa 46716556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 183
Target Start/End: Original strand, 24100544 - 24100606
Alignment:
Q  121 atttatattatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    |||| |||| |||| ||||| | |||||| |||| ||||| ||||||||||||||||||||||    
T  24100544 atttgtattgtatcgatgtactctatcaatttgaatgaatgaatatcatttatttttgtcaaa 24100606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 183
Target Start/End: Complemental strand, 24611508 - 24611446
Alignment:
Q  121 atttatattatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    |||| |||| |||||||||| | |||||| |||| ||||| ||||||||||| ||||||||||    
T  24611508 atttgtattgtatcaatgtactctatcaatttgaatgaatgaatatcatttacttttgtcaaa 24611446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 183
Target Start/End: Original strand, 27091119 - 27091181
Alignment:
Q  121 atttatattatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    |||| |||| |||| ||||| | |||||| |||| |||||||||||| |||||||||||||||    
T  27091119 atttgtattgtatcgatgtactctatcaatttgaatgaataaatatcgtttatttttgtcaaa 27091181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 177
Target Start/End: Original strand, 6408834 - 6408891
Alignment:
Q  120 aatttatattatatcaatgtagtttatcaacttgattgaataaatatcatttattttt 177  Q
    ||||| ||||||||||||||| ||| |||| || | ||||| ||||||||||||||||    
T  6408834 aatttttattatatcaatgtactttgtcaatttaaatgaatgaatatcatttattttt 6408891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 177
Target Start/End: Complemental strand, 50274435 - 50274378
Alignment:
Q  120 aatttatattatatcaatgtagtttatcaacttgattgaataaatatcatttattttt 177  Q
    |||||||||| |||||||||| ||||| || || | |||||||||||| |||||||||    
T  50274435 aatttatattgtatcaatgtactttattaatttaaatgaataaatatcgtttattttt 50274378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 183
Target Start/End: Complemental strand, 56236536 - 56236479
Alignment:
Q  126 tattatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    |||| |||| ||||| | |||||| |||| ||||| ||||||||||||||||||||||    
T  56236536 tattgtatcgatgtactctatcaatttgaatgaatgaatatcatttatttttgtcaaa 56236479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 183
Target Start/End: Original strand, 9549828 - 9549884
Alignment:
Q  127 attatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    |||||||| ||||| | ||| || |||| ||||| ||||||||||||||||||||||    
T  9549828 attatatcgatgtactatattaatttgaatgaatgaatatcatttatttttgtcaaa 9549884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 185
Target Start/End: Original strand, 13965954 - 13966018
Alignment:
Q  121 atttatattatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaata 185  Q
    |||| |||| |||| ||||| | |||||| |||| ||||| |||||| |||||||||||||||||    
T  13965954 atttgtattgtatcgatgtactctatcaatttgaatgaatgaatatcgtttatttttgtcaaata 13966018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 183
Target Start/End: Original strand, 26674804 - 26674832
Alignment:
Q  155 ttgaataaatatcatttatttttgtcaaa 183  Q
    |||||||||||||||||||||||||||||    
T  26674804 ttgaataaatatcatttatttttgtcaaa 26674832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 182
Target Start/End: Original strand, 27395216 - 27395288
Alignment:
Q  110 agcgactttcaatttatattatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaa 182  Q
    ||||| ||| ||||| ||||||||| ||| | | |||||| |||| ||||| ||||| |||||||||||||||    
T  27395216 agcgaatttgaatttgtattatatcgatgaactctatcaatttgaatgaatgaatattatttatttttgtcaa 27395288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 44374993 - 44374941
Alignment:
Q  127 attatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgt 179  Q
    |||||||| ||||| | |||||| |||| ||||| ||||||||||||||||||    
T  44374993 attatatcgatgtactctatcaatttgaatgaatgaatatcatttatttttgt 44374941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 179
Target Start/End: Original strand, 5457460 - 5457519
Alignment:
Q  120 aatttatattatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgt 179  Q
    ||||||||||||||| ||||| | |||||| |||| ||||| ||||||||||||||||||    
T  5457460 aatttatattatatcgatgtactctatcaatttgaatgaatgaatatcatttatttttgt 5457519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 110 - 183
Target Start/End: Complemental strand, 2234199 - 2234126
Alignment:
Q  110 agcgactttcaatttatattatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    ||||| ||| ||||| ||||||||| ||||| | |||||| |||| ||||| |||||| |||||||||||||||    
T  2234199 agcgaatttgaatttgtattatatcgatgtactctatcaatttgaatgaatgaatatcgtttatttttgtcaaa 2234126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 110 - 183
Target Start/End: Complemental strand, 30026611 - 30026538
Alignment:
Q  110 agcgactttcaatttatattatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    ||||| ||| ||||| |||| ||||||| || | |||||| |||| |||||||||||| |||||||||||||||    
T  30026611 agcgaatttgaatttgtattgtatcaatatactctatcaatttgaatgaataaatatcgtttatttttgtcaaa 30026538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 144 - 183
Target Start/End: Original strand, 2629326 - 2629365
Alignment:
Q  144 tatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    ||||||||||| ||||| ||||||||||||||||||||||    
T  2629326 tatcaacttgaatgaattaatatcatttatttttgtcaaa 2629365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 179
Target Start/End: Complemental strand, 8054533 - 8054474
Alignment:
Q  120 aatttatattatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgt 179  Q
    ||||| ||||||||| ||||| | |||||| |||| ||||| ||||||||||||||||||    
T  8054533 aatttgtattatatcgatgtattctatcaatttgaatgaatgaatatcatttatttttgt 8054474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 183
Target Start/End: Complemental strand, 7579573 - 7579511
Alignment:
Q  121 atttatattatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    ||||||||| |||| ||||| | |||||| |||| ||||| ||||||||||| ||||||||||    
T  7579573 atttatattgtatcgatgtactctatcaatttgaatgaatgaatatcatttagttttgtcaaa 7579511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 183
Target Start/End: Complemental strand, 31712790 - 31712736
Alignment:
Q  129 tatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    |||||| ||||| | |||||| |||| ||||| ||||||||||||||||||||||    
T  31712790 tatatcgatgtactctatcaatttgaatgaatgaatatcatttatttttgtcaaa 31712736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 179
Target Start/End: Original strand, 5526202 - 5526271
Alignment:
Q  110 agcgactttcaatttatattatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgt 179  Q
    ||||| ||| || ||||||| |||| ||||| | |||||| |||| |||||||||||| |||||||||||    
T  5526202 agcgaatttgaacttatattgtatcgatgtactctatcaatttgaatgaataaatatcgtttatttttgt 5526271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 183
Target Start/End: Complemental strand, 14600427 - 14600354
Alignment:
Q  110 agcgactttcaatttatattatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    ||||| ||| ||||| |||| |||| ||||| | ||| || |||| |||||||||||| |||||||||||||||    
T  14600427 agcgaatttaaatttgtattgtatcgatgtactctattaatttgaatgaataaatatcgtttatttttgtcaaa 14600354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 176
Target Start/End: Original strand, 32413186 - 32413235
Alignment:
Q  127 attatatcaatgtagtttatcaacttgattgaataaatatcatttatttt 176  Q
    |||||||||||||| | |||||| |||| ||||| |||||||||||||||    
T  32413186 attatatcaatgtactctatcaatttgaatgaatgaatatcatttatttt 32413235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 185
Target Start/End: Complemental strand, 24790888 - 24790824
Alignment:
Q  121 atttatattatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaata 185  Q
    |||| |||| |||| ||||| | |||||| |||| ||||| |||||| |||||||||||||||||    
T  24790888 atttgtattgtatcgatgtactctatcaatttgaatgaatgaatatcgtttatttttgtcaaata 24790824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 32104555 - 32104499
Alignment:
Q  127 attatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    |||||||| ||||| | |||||| |||| ||||| ||||| ||||||||||||||||    
T  32104555 attatatcgatgtactctatcaatttgaatgaatgaatataatttatttttgtcaaa 32104499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 183
Target Start/End: Original strand, 5545069 - 5545132
Alignment:
Q  120 aatttatattatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    |||||| ||| |||||||||| | |||||| |||| ||||| ||||||||||||||||||||||    
T  5545069 aatttacattgtatcaatgtactctatcaatttgaatgaatgaatatcatttatttttgtcaaa 5545132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 183
Target Start/End: Original strand, 2488533 - 2488595
Alignment:
Q  121 atttatattatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    |||| |||| |||| ||||| | |||||| |||| |||||||||||| |||||||||||||||    
T  2488533 atttgtattgtatcgatgtactctatcaatttgaatgaataaatatcgtttatttttgtcaaa 2488595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 183
Target Start/End: Original strand, 5146337 - 5146399
Alignment:
Q  121 atttatattatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    |||| ||||||||| ||||| | |||||| |||| ||||| |||||| |||||||||||||||    
T  5146337 atttgtattatatcgatgtactctatcaatttgaatgaatgaatatcgtttatttttgtcaaa 5146399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 183
Target Start/End: Complemental strand, 12481089 - 12481027
Alignment:
Q  121 atttatattatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    |||| |||| |||| ||||| |||||||| |||| ||||| |||||| |||||||||||||||    
T  12481089 atttgtattgtatcgatgtactttatcaatttgaatgaatgaatatcgtttatttttgtcaaa 12481027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 183
Target Start/End: Complemental strand, 15589835 - 15589773
Alignment:
Q  121 atttatattatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    ||||||||| |||| ||||| | |||||| |||| ||||| |||||| |||||||||||||||    
T  15589835 atttatattgtatcgatgtactctatcaatttgaatgaatgaatatcgtttatttttgtcaaa 15589773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 30813457 - 30813530
Alignment:
Q  110 agcgactttcaatttatattatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    ||||| ||| ||||| |||| |||| ||||| | |||||| |||| ||||| |||||| |||||||||||||||    
T  30813457 agcgaatttgaatttgtattgtatcgatgtactctatcaatttgaatgaatgaatatcgtttatttttgtcaaa 30813530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 8644628 - 8644680
Alignment:
Q  131 tatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    |||| ||||| | |||||| |||| ||||| ||||||||||||||||||||||    
T  8644628 tatcgatgtactctatcaatttgaatgaattaatatcatttatttttgtcaaa 8644680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 110 - 184
Target Start/End: Original strand, 55455262 - 55455336
Alignment:
Q  110 agcgactttcaatttatattatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaat 184  Q
    ||||| ||| ||||| |||| |||||||||| | |||||| |||| ||||| |||||| ||||||||||||||||    
T  55455262 agcgaatttgaatttgtattgtatcaatgtactctatcaatttgaatgaatgaatatcgtttatttttgtcaaat 55455336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 179
Target Start/End: Complemental strand, 25111894 - 25111829
Alignment:
Q  114 actttcaatttatattatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgt 179  Q
    ||||| ||||||||||||||| ||||| | ||| || |||| ||||| ||||||||||||||||||    
T  25111894 actttgaatttatattatatcgatgtactctattaatttgaatgaatgaatatcatttatttttgt 25111829  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 126 - 183
Target Start/End: Complemental strand, 48652162 - 48652105
Alignment:
Q  126 tattatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    |||| |||| ||||| |||||||| |||| ||||| ||||||||||||||||||||||    
T  48652162 tattgtatcgatgtactttatcaatttgaatgaatgaatatcatttatttttgtcaaa 48652105  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 183
Target Start/End: Original strand, 534390 - 534460
Alignment:
Q  113 gactttcaatttatattatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    |||||| ||||| |||| |||| || || ||||||||||||| |||||| |||||||||| |||| |||||    
T  534390 gactttgaatttttattgtatcgatatactttatcaacttgaatgaatagatatcatttacttttatcaaa 534460  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 183
Target Start/End: Original strand, 33637805 - 33637867
Alignment:
Q  121 atttatattatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    |||| |||| |||| ||||| |||||||| |||| ||||| |||||| |||||||||||||||    
T  33637805 atttgtattgtatcgatgtactttatcaatttgaatgaatgaatatcgtttatttttgtcaaa 33637867  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 183
Target Start/End: Complemental strand, 13701731 - 13701658
Alignment:
Q  110 agcgactttcaatttatattatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    ||||| ||| ||||| |||| |||| ||||| | |||||| |||| ||||| |||||| |||||||||||||||    
T  13701731 agcgaatttgaatttgtattgtatcgatgtactctatcaatttgaatgaatgaatatcgtttatttttgtcaaa 13701658  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 176
Target Start/End: Complemental strand, 20200783 - 20200727
Alignment:
Q  120 aatttatattatatcaatgtagtttatcaacttgattgaataaatatcatttatttt 176  Q
    ||||| ||||||||||||||| | |||||| |||| ||||| |||||| ||||||||    
T  20200783 aatttgtattatatcaatgtactctatcaatttgaatgaatgaatatcttttatttt 20200727  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 176
Target Start/End: Complemental strand, 20202965 - 20202909
Alignment:
Q  120 aatttatattatatcaatgtagtttatcaacttgattgaataaatatcatttatttt 176  Q
    ||||| ||||||||||||||| | |||||| |||| ||||| |||||| ||||||||    
T  20202965 aatttgtattatatcaatgtactctatcaatttgaatgaatgaatatcttttatttt 20202909  T

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Target: scaffold0536 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 3295 - 3368
Alignment:
Q  110 agcgactttcaatttatattatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    ||||| ||| |||||||||| |||| ||||| | |||||| |||| ||||| |||||| |||||||||||||||    
T  3295 agcgaatttaaatttatattgtatcgatgtactctatcaatttgaatgaatgaatatcgtttatttttgtcaaa 3368  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 183
Target Start/End: Complemental strand, 44562467 - 44562411
Alignment:
Q  127 attatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    |||||||| ||||| | |||||| |||| ||||| ||||||||||||||||||||||    
T  44562467 attatatcgatgtactctatcaatttgactgaatgaatatcatttatttttgtcaaa 44562411  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 182
Target Start/End: Original strand, 28213449 - 28213504
Alignment:
Q  127 attatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaa 182  Q
    |||||||||||||| |||||||| |||| | ||| |||||||||||||| ||||||    
T  28213449 attatatcaatgtactttatcaatttgaataaatgaatatcatttatttctgtcaa 28213504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 183
Target Start/End: Original strand, 12872017 - 12872079
Alignment:
Q  121 atttatattatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    |||| |||| |||||||||| | |||||| |||| ||||| |||||| |||||||||||||||    
T  12872017 atttgtattgtatcaatgtactctatcaatttgaatgaatgaatatcgtttatttttgtcaaa 12872079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 129 - 183
Target Start/End: Complemental strand, 12967449 - 12967395
Alignment:
Q  129 tatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    |||||| ||||| | |||||| |||| ||||| ||||||||||||||||||||||    
T  12967449 tatatcgatgtactctatcaatttgaatgaatgaatatcatttatttttgtcaaa 12967395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 121 - 183
Target Start/End: Complemental strand, 15390962 - 15390900
Alignment:
Q  121 atttatattatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    |||| |||| |||| ||||| | |||||| |||| |||||||||||| |||||||||||||||    
T  15390962 atttgtattgtatcgatgtactctatcaagttgaatgaataaatatcgtttatttttgtcaaa 15390900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 185
Target Start/End: Original strand, 10304973 - 10305038
Alignment:
Q  120 aatttatattatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaata 185  Q
    |||||||||| |||| ||||| | |||||| |||| ||||| |||||| ||||||||||| |||||    
T  10304973 aatttatattgtatcgatgtaatctatcaatttgaatgaatgaatatcctttatttttgtaaaata 10305038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 183
Target Start/End: Complemental strand, 15790997 - 15790924
Alignment:
Q  110 agcgactttcaatttatattatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    ||||| ||| ||||| |||| |||| ||||| |||||||| |||| | ||| |||||| |||||||||||||||    
T  15790997 agcgaatttgaatttgtattgtatcgatgtactttatcaatttgaataaatgaatatcttttatttttgtcaaa 15790924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 183
Target Start/End: Complemental strand, 25689574 - 25689501
Alignment:
Q  110 agcgactttcaatttatattatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    ||||||||| ||||| |||| ||||||| || | |||||| |||| |||||||||||| || |||||| |||||    
T  25689574 agcgactttgaatttgtattgtatcaatatactctatcaatttgaatgaataaatatcgttcatttttttcaaa 25689501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 13969354 - 13969302
Alignment:
Q  131 tatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    |||| ||||| | |||||| |||| ||||| ||||||||||||||||||||||    
T  13969354 tatcgatgtattctatcaatttgaatgaatgaatatcatttatttttgtcaaa 13969302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 46589548 - 46589600
Alignment:
Q  131 tatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    |||| ||||| | |||||| |||| ||||| ||||||||||||||||||||||    
T  46589548 tatcgatgtactctatcaatttgaatgaatgaatatcatttatttttgtcaaa 46589600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0722 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0722
Description:

Target: scaffold0722; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 120 - 183
Target Start/End: Complemental strand, 5251 - 5188
Alignment:
Q  120 aatttatattatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtcaaa 183  Q
    ||||| ||||||||| ||||| | ||| || |||| ||||| ||||||||||||||||||||||    
T  5251 aatttgtattatatcgatgtactctataaatttgaatgaatgaatatcatttatttttgtcaaa 5188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 181
Target Start/End: Complemental strand, 48069 - 48015
Alignment:
Q  127 attatatcaatgtagtttatcaacttgattgaataaatatcatttatttttgtca 181  Q
    |||||||| ||||| | |||||| ||||  |||||||||||||||||||||||||    
T  48069 attatatcgatgtactatatcaatttgaaagaataaatatcatttatttttgtca 48015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 120 - 176
Target Start/End: Original strand, 36913 - 36969
Alignment:
Q  120 aatttatattatatcaatgtagtttatcaacttgattgaataaatatcatttatttt 176  Q
    |||||| |||||||||||||| | |||||| |||| ||||| |||||| ||||||||    
T  36913 aatttacattatatcaatgtactctatcaatttgaatgaatgaatatcttttatttt 36969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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