View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8900_low_41 (Length: 319)
Name: NF8900_low_41
Description: NF8900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8900_low_41 |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 12268834 - 12269129
Alignment:
| Q |
1 |
aatagctagaagagttatggtagttagtcaagtaaaacaatgcgttgtgatgatgttaaagattatgctagtcgtaactcatgctcgtgatttacttcaa |
100 |
Q |
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| T |
12268834 |
aatagctagaagagttatggtagttagtcaagtaaaacaatgcgttgtgatgatgttaatgattatgctagtcgtaactcatgctcgtgatttacttcaa |
12268933 |
T |
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| Q |
101 |
tcacaagtaattgagccaaatggnnnnnnnnnnnccgcatattacgtgtcgtgctaggtgtttgaatccattgaaatatcacaaatatataccatcatgt |
200 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12268934 |
tcacaagtaattgagccaaatggtttttttttt-ccgcatattacgtgtcgtgctaggtgtttgaatccattgaaatatcacaaatatataccatcatgt |
12269032 |
T |
|
| Q |
201 |
tttaagtcactagaatcagtcacaaacctcgtgaattattatttttgctacgaaaaatgttatgaggaatgtattaattgaataatggttttcatac |
297 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
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| T |
12269033 |
tttaagtcactagaatcagtcacaaacctcgagaattattatttttgctacgaaaaatgttatgaggattgtattaattgaataatggtattcatac |
12269129 |
T |
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