View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8900_low_42 (Length: 317)
Name: NF8900_low_42
Description: NF8900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8900_low_42 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 81; Significance: 4e-38; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 197 - 317
Target Start/End: Complemental strand, 25027706 - 25027586
Alignment:
| Q |
197 |
aaatcaattttacatctgtataattgaacagatttattctatatattttttgcattactccgttcggtttttatgttaaatgagtcatagaaatctgtag |
296 |
Q |
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| T |
25027706 |
aaatcaattttacatctgtataattgaacatatttattctacatattttttgcattaatccgttcggtttttatggtaaaggagtcatagaaatcggaag |
25027607 |
T |
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| Q |
297 |
tttgatcgaaaaataaataaa |
317 |
Q |
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| T |
25027606 |
tttggtcaaaaaataagtaaa |
25027586 |
T |
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Target: chr6; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 8 - 72
Target Start/End: Complemental strand, 25028318 - 25028254
Alignment:
| Q |
8 |
gagtttggtgttatatgttagcatatgacaaacttttttagtagtctattagttagaattttatt |
72 |
Q |
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| T |
25028318 |
gagtgtggtgttatatgttagtatatgacaaacttttttagtagtctattagatagaaatttatt |
25028254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 156
Target Start/End: Complemental strand, 25028264 - 25028206
Alignment:
| Q |
98 |
agaaatgtattcatgttttttacatattgcaatgtcattattaattgaactatattgac |
156 |
Q |
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| T |
25028264 |
agaaatttattcatgtttcttacatactgcaatgtcattatcaattaaactatgttgac |
25028206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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