View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8900_low_45 (Length: 309)

Name: NF8900_low_45
Description: NF8900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8900_low_45
NF8900_low_45
[»] chr4 (1 HSPs)
chr4 (1-291)||(43817996-43818286)


Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 291
Target Start/End: Complemental strand, 43818286 - 43817996
Alignment:
Q  1 caacgaaatggtccaaagtagtattgtccccaaataaatgtgttaaacatgaaagaaaacatagtaactactttataccggtaacccaaataaggaataa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43818286 caacgaaatggtccaaagtagtattgtccccaaataaatgtgttaaacatgaaagaaaacatagtaactactttataccggtaacccaaataaggaataa 43818187  T
Q  101 aataaaatctaagccagttcattaattccaccattaataatcatattctctaatgatcgtttttctctcttatctaactgcaaataagaagaatctaaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43818186 aataaaatctaagccagttcattaattccaccattaataatcatattctctaatgatcgtttttctctcttatctaactgcaaataagaagaatctaaaa 43818087  T
Q  201 agatattatttatgttataaaattaacgaagaaaattattcacctgagggtttggtaaccgtctctcccaatctacctttaaggtagatca 291  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43818086 agatattatttatgttataaaattagcgaagaaaattattcacctgagggtttggtaaccgtctctcccaatctacctttaaggtagatca 43817996  T

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