View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8900_low_48 (Length: 303)
Name: NF8900_low_48
Description: NF8900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8900_low_48 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 17 - 290
Target Start/End: Complemental strand, 35845618 - 35845349
Alignment:
| Q |
17 |
aataactctataatcttagtatataaataaatatatacatgcacgtatataatgggacccgttccttcgtcaaacttttcaatttgttcccacctaaact |
116 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35845618 |
aataactctataatcttagtatataaata----tatacatgcacgtatataatgggacccgttccttcgtcaaacttttcaatttgttcccacctaaact |
35845523 |
T |
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| Q |
117 |
aagactttgttctcatttccataccactgtttttctgtcactatgtggaatttctcgattgctactttgttatattattttcttcttcaaatgccatatg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35845522 |
aagactttgttctcatttccataccactgtttttctgtcactatgtggaatttctcgattgctactttgttatattattttcttcttcaaatgccatatg |
35845423 |
T |
|
| Q |
217 |
cttccacagccttctttgctatgtacatctaaccatgacgtctgatttttggtatgctatgtgtgtagaataat |
290 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35845422 |
cttccacagccttctttgctatgtacatctaaccatgacgtctgatttttggtatgctatgtgtgtagaataat |
35845349 |
T |
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