View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8900_low_5 (Length: 522)
Name: NF8900_low_5
Description: NF8900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8900_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 214 - 515
Target Start/End: Complemental strand, 40375135 - 40374825
Alignment:
| Q |
214 |
ttacatcaaattccaatatattcatcttagggagacaacggagaaagagagaaatgccaattttgaaaattaaaactggcattgccaagctattggaacg |
313 |
Q |
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| T |
40375135 |
ttacatcaaattccaatatattcatcttagggagacaacggagaaagagagaaatgccaattttgaaaattaaaactggcattgccaaactattggaacg |
40375036 |
T |
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| Q |
314 |
tagggggtcctcttcaataatttcccttattcaccagtcaattagtaaaaataaccttcatctcttaaagtgtgatggagcatgaaacaatgacattaag |
413 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
40375035 |
tagggggtcctcttcaataatttcccttattcgccagtcaattagtacaaataaccttcatctcttaaagtgtgatggaacatgaaacaatgacattaag |
40374936 |
T |
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| Q |
414 |
ggcaagga---------attcaataacagcctctctatatcctctttccaagcaagaacgataacatgtaaaatagtcataggttctgcatgtattatag |
504 |
Q |
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| T |
40374935 |
ggcaaggaacaaatcttattcaataacagcctctctatatcctctttccaagcaagaacgataacatgtaaaatagtcataggttctgcatgtattatag |
40374836 |
T |
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| Q |
505 |
aagcaactcca |
515 |
Q |
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||||||||||| |
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| T |
40374835 |
aagcaactcca |
40374825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 21 - 163
Target Start/End: Complemental strand, 40375322 - 40375179
Alignment:
| Q |
21 |
acctaattttaaaataaaactcatttctaaatataacgagttctattttgcaacaaat-cgtaaataagaaaaacttttaaccaagagggtttgtatatg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||| |
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| T |
40375322 |
acctaattttaaaataaaactcatttctaaatataatgagttctattttgcaacaaattcataaataaaaaaaacttttaaccaagagggtttgtatatg |
40375223 |
T |
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| Q |
120 |
ctctgagtctttcagctttatgaactgccttaactttatttggg |
163 |
Q |
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| T |
40375222 |
ctctgagtctttcagcgttacgaactgccttaattttaattggg |
40375179 |
T |
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