View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8900_low_50 (Length: 301)
Name: NF8900_low_50
Description: NF8900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8900_low_50 |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 44964831 - 44965110
Alignment:
| Q |
1 |
agaccaacaacataggtgctcttgcaccaataacgtagcattctattctaggacatcaatttgatcctttgcatgcggataacaacatagcatatgtgat |
100 |
Q |
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| T |
44964831 |
agaccaacaacataggtgctcttgaaccaataacgtagcattctattctaggacatcaatttgatcctttgcatgcggataacaacatagcatatgtgat |
44964930 |
T |
|
| Q |
101 |
acattcaatacattacaacacaacatatttttctttcatgttgcactatcccatactccaaacaatgctacttttaatttagcttcattgttgccaaatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44964931 |
acattcaatacattacaacacaacatatttttctttcatgttgcactatcccatactccaaacaatgctacttttaatttagcttcattgttgccaaatc |
44965030 |
T |
|
| Q |
201 |
cacatctatacagacatgggtcacaaagaaaaatcacgaaaagataagagattgcaagaaatatcccttttgagaaccat |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44965031 |
cacatctatacagacatgggtcacaaagaaaaatcacgaaaagataagagattgcaagaaatatcccttttgagaaccat |
44965110 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 280
Target Start/End: Original strand, 40068400 - 40068441
Alignment:
| Q |
239 |
aaaagataagagattgcaagaaatatcccttttgagaaccat |
280 |
Q |
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| T |
40068400 |
aaaagataagagatcgcaagaaatatcgcttttgaggaccat |
40068441 |
T |
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