View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8900_low_51 (Length: 292)
Name: NF8900_low_51
Description: NF8900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8900_low_51 |
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Alignment Details
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 17 - 275
Target Start/End: Original strand, 29511122 - 29511380
Alignment:
| Q |
17 |
attgaacagcaattaaagattcacaaattgatttaccattatgaataagaacagggattttcttatgaacagggttcatttgtaacaacaaagggctctt |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29511122 |
attgaacagcaattaaagattcacaaattgatttaccattatgaataagaactgggattttcttatgaacagggttcatttgtaacaacaaagggctctt |
29511221 |
T |
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| Q |
117 |
gttccttaaatcttcttctttgtactcatgcttgatacccttttcagctagggctattctgaccctcatgccaaatggacttgcccagtaatctagcaga |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29511222 |
gttccttaaatcttcttctttgtactcatgcttgatacccttttcagctagggctattctgaccctcatgccaaatggacttgcccagtaatctagcaga |
29511321 |
T |
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| Q |
217 |
ataacttcatcagccatggctagttagagaagaatgaattgctatggaagaagaagaaa |
275 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29511322 |
atcacttcatcagccatggctagttagagaagaatgaattgctatggaagaagaagaaa |
29511380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 275
Target Start/End: Original strand, 29518242 - 29518501
Alignment:
| Q |
19 |
tgaacagcaattaaagattcacaaattgatttaccattatgaataagaacagggattttcttatgaacagggttcatttgtaacaacaaagggctcttgt |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
29518242 |
tgaacagcaattaaagattcacaaattgatttaccattatgaataagaacagggattttcttatgaacagggttcatttgtaacaacaaagggcttttgt |
29518341 |
T |
|
| Q |
119 |
tccttaaatcttcttctttgtactcatgcttgatacccttttcagctagggctattctgaccctcatgccaaatggacttgcccagtaatctagcagaat |
218 |
Q |
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| T |
29518342 |
tccttaaatcttcttctctgtactcatgtttgatacccttttcagctaaggctattctgaccctcatgccaaatggacttacccagtaatctagcagaat |
29518441 |
T |
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| Q |
219 |
aacttcatcagccatggctagt---tagagaagaatgaattgctatggaagaagaagaaa |
275 |
Q |
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||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||| |
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| T |
29518442 |
cacttcatcagccatggctagtagaaagaaaagaatgaattgttatggaagaagaagaaa |
29518501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 19 - 246
Target Start/End: Original strand, 29535378 - 29535605
Alignment:
| Q |
19 |
tgaacagcaattaaagattcacaaattgatttaccattatgaataagaacagggattttcttatgaacagggttcatttgtaacaacaaagggctcttgt |
118 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||||||||| |||| |
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| T |
29535378 |
tgaacagccattaaagattcacaaattgatttaccattatgaattagaacagggattttcttgtgaatagggttcatttgtaacaacaaagggcttttgt |
29535477 |
T |
|
| Q |
119 |
tccttaaatcttcttctttgtactcatgcttgatacccttttcagctagggctattctgaccctcatgccaaatggacttgcccagtaatctagcagaat |
218 |
Q |
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| ||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
29535478 |
tgcttaagtcttcttctctgtactcatacttgatacccttttcagctagggctattctgaccctcatgccaaatggacttacccagtaatctagcagaat |
29535577 |
T |
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| Q |
219 |
aacttcatcagccatggctagttagaga |
246 |
Q |
| |
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|||| |||||||||||||||||||||| |
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| T |
29535578 |
cactttatcagccatggctagttagaga |
29535605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 29507302 - 29507531
Alignment:
| Q |
17 |
attgaacagcaattaaagattcacaaattgatttaccattatgaataagaacagggattttcttatgaacagggttcatttgtaacaacaaagggctctt |
116 |
Q |
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||||||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||| || |
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| T |
29507302 |
attgaacagcaattaaagattcacaaactggtttaccattatgaatgagaacagggattttcttgtgaacagggttcatttgtagcaacaaagggctttt |
29507401 |
T |
|
| Q |
117 |
gttccttaaatcttcttctttgtactcatgcttgatacccttttcagctagggctattctgaccctcatgccaaatggacttgcccagtaatctagcaga |
216 |
Q |
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||| ||||| ||||||||| |||||||||||||||||||||||||||||| | ||||| ||| ||||| ||||||||||||| |||||||| |||||| |
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| T |
29507402 |
gttgcttaagtcttcttctctgtactcatgcttgatacccttttcagctaagactattttgagtctcattccaaatggacttggccagtaattaagcaga |
29507501 |
T |
|
| Q |
217 |
ataacttcatcagccatggctagttagaga |
246 |
Q |
| |
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|| ||||||||||||||| ||||||||||| |
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| T |
29507502 |
atcacttcatcagccatgactagttagaga |
29507531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 17 - 235
Target Start/End: Original strand, 29549137 - 29549361
Alignment:
| Q |
17 |
attgaacagcaattaaagattcacaaattgatttaccattatgaataagaacagggattttcttatgaacagggttcatttgtaacaacaaagggctctt |
116 |
Q |
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|
|||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||| ||||| |||||||||| || ||||||||| ||||| |
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| T |
29549137 |
attgaacagcaattaaagattcacaaatgggttttccattatgaataagaacagggattttcttctgaaccgggttcatttctagcaacaaaggactctt |
29549236 |
T |
|
| Q |
117 |
gtt------ccttaaatcttcttctttgtactcatgcttgatacccttttcagctagggctattctgaccctcatgccaaatggacttgcccagtaatct |
210 |
Q |
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|| | |||| ||||||||| |||| | || |||||||||||||||||| || |||||||| || || || ||||||||||||| ||| ||||| |
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| T |
29549237 |
tttcaatgacattaattcttcttctatgtatttatacttgatacccttttcagcaagtgctattctaactcttattccaaatggacttggccaaaaatct |
29549336 |
T |
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| Q |
211 |
agcagaataacttcatcagccatgg |
235 |
Q |
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|| |||||||||||||| ||||||| |
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| T |
29549337 |
agaagaataacttcatcggccatgg |
29549361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 37 - 233
Target Start/End: Original strand, 29505502 - 29505698
Alignment:
| Q |
37 |
tcacaaattgatttaccattatgaataagaacagggattttcttatgaacagggttcatttgtaacaacaaagggctcttgttccttaaatcttcttctt |
136 |
Q |
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|||||||| ||||| |||||||| || ||||| || |||||||| |||| || |||||||||| | ||||| |||||||| || ||||| ||||| | |
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| T |
29505502 |
tcacaaatggatttgccattatggattagaactggaattttcttgtgaattggattcatttgtaggagtaaaggactcttgttactgaaatcctcttcct |
29505601 |
T |
|
| Q |
137 |
tgtactcatgcttgatacccttttcagctagggctattctgaccctcatgccaaatggacttgcccagtaatctagcagaataacttcatcagccat |
233 |
Q |
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||| | ||| ||||||||||||||| |||| || ||| ||||||||||||| | ||||||| |||| ||| || ||| || |||||||| ||||| |
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| T |
29505602 |
tgttcacatacttgatacccttttcctctagtgcaattaggaccctcatgccataaggacttggccagaaatttaacaggattacttcatctgccat |
29505698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 166
Target Start/End: Complemental strand, 29488404 - 29488271
Alignment:
| Q |
33 |
agattcacaaattgatttaccattatgaataagaacagggattttcttatgaacagggttcatttgtaacaacaaagggctcttgttccttaaatcttct |
132 |
Q |
| |
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|||||||||||| ||||| |||||||| |||||||| || || || || |||| ||||||||||| | | ||||| ||||| || || | ||||||| |
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| T |
29488404 |
agattcacaaatggattttccattatggataagaactggaatcttgttgtgaattgggttcatttgaagaagtaaaggactcttatttctgagatcttct |
29488305 |
T |
|
| Q |
133 |
tctttgtactcatgcttgatacccttttcagcta |
166 |
Q |
| |
|
||||||||||||| || | || ||||||||||| |
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| T |
29488304 |
tctttgtactcatatttaacactcttttcagcta |
29488271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 33 - 97
Target Start/End: Complemental strand, 29502602 - 29502538
Alignment:
| Q |
33 |
agattcacaaattgatttaccattatgaataagaacagggattttcttatgaacagggttcattt |
97 |
Q |
| |
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|||||||||||| ||||| |||||||| |||||||| || || ||||| |||| |||||||||| |
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| T |
29502602 |
agattcacaaatggattttccattatggataagaactggaatcttcttgtgaattgggttcattt |
29502538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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