View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8900_low_52 (Length: 281)
Name: NF8900_low_52
Description: NF8900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8900_low_52 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 7e-92; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 7e-92
Query Start/End: Original strand, 13 - 263
Target Start/End: Original strand, 35651508 - 35651756
Alignment:
| Q |
13 |
acctgtgaacatatagatgagttgttatttaaatatggaaaatgcttatttacacgataaagttttcacgtgaattccacgaatgatcctccacacacta |
112 |
Q |
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| T |
35651508 |
acctgtggacatgtagatgagttcttatttaaatatggaaaatgcttatttacacgacaaagttttcacgtgaatcccacgaatgatcctgcgcacacta |
35651607 |
T |
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| Q |
113 |
ttcggtacttgttcaacattgaattggcagtataactaatttaacattcaactacctctcttagaatctcaaccatatcctgttttaaaatggacaccta |
212 |
Q |
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| T |
35651608 |
ttcggtacttgttcaacattaaattgacactataactaatttaacattcaactacctctcttagaacctcaaccatatcctgttttaaaatggacaccta |
35651707 |
T |
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| Q |
213 |
cttcaaacaaacnnnnnnnncaatcaatctattagtttgagagtgaagcat |
263 |
Q |
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| T |
35651708 |
cttcaaacaaa--aaaaaaacaatcaatctattagtttgagagggaagcat |
35651756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 51 - 263
Target Start/End: Original strand, 26157177 - 26157395
Alignment:
| Q |
51 |
aaaatgcttatttacacgataaagttttcacgtgaattccacgaatgatcctccacacactattcggtacttgttcaacattgaattggcagtata---- |
146 |
Q |
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| T |
26157177 |
aaaatgcttatttacacaacaacgttttcgcgtgaatcccacgaatgatcatgcacac-------ggtacttgtttaacattgaattggcaatatagcct |
26157269 |
T |
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| Q |
147 |
------actaatttaacattcaactacctctcttagaatctcaaccatatcctgttttaaaatggacacctacttcaaacaaa---cnnnnnnnncaatc |
237 |
Q |
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| T |
26157270 |
cctataactaatttaacattgaactacctctcttaaaacctcaaccatatcctgttttaaaatggacacctacttaaaacaaaaacaaaaaaaaacaatc |
26157369 |
T |
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| Q |
238 |
aatctattagtttgagagtgaagcat |
263 |
Q |
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| T |
26157370 |
aatctattagtttgagagtgaagcat |
26157395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 143 - 202
Target Start/End: Original strand, 2217145 - 2217204
Alignment:
| Q |
143 |
tataactaatttaacattcaactacctctcttagaatctcaaccatatcctgttttaaaa |
202 |
Q |
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|||||||||||||||||| ||| ||||||||||||| |||| |||||||||||||||||| |
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| T |
2217145 |
tataactaatttaacattgaacgacctctcttagaacctcacccatatcctgttttaaaa |
2217204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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