View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8900_low_54 (Length: 280)
Name: NF8900_low_54
Description: NF8900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8900_low_54 |
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Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 268
Target Start/End: Original strand, 17734406 - 17734663
Alignment:
| Q |
11 |
acatcagagcagaatctcatcggaaaatcactgaccaacctcaccaacgtttctctgaacatcaccaaacacttgttatccgataaaaaactcaatgaaa |
110 |
Q |
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| T |
17734406 |
acatcagagcagaatctcatcggaaaatcactgacaaacctcaccaacgtttctctgaacatcaccaaacacttgttatccaatcaaaaactcaatgaaa |
17734505 |
T |
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| Q |
111 |
agaacgttgtgttttcaccattatcgctcaacaccgtactcattatgatcactaccggctccgagggtcccgcacaaaaccaacttctcttcttcctcca |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| ||||||||| |
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| T |
17734506 |
agaacgttgtgttttcaccattatcgctcaacaccgtactcattatgatcactgccggctccgagggtcccacacaaaaccaacttctctccttcctcca |
17734605 |
T |
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| Q |
211 |
gtctgaatccatcggtgatctcaaatccttatgctctcagcttgtttcttctgtgctc |
268 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17734606 |
gtctgaatccaccggtgatctcaaatccttatgctctcagcttgtttcttctgtgctc |
17734663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 21 - 268
Target Start/End: Original strand, 17743656 - 17743903
Alignment:
| Q |
21 |
agaatctcatcggaaaatcactgaccaacctcaccaacgtttctctgaacatcaccaaacacttgttatccgataaaaaactcaatgaaaagaacgttgt |
120 |
Q |
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|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| |||| |
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| T |
17743656 |
agaatctcatcggaaaatcactcaccaaattcaccaacgtttctctgaacatcaccaaacacttgttatccaatcaaaaactcaatgaaaagaacattgt |
17743755 |
T |
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| Q |
121 |
gttttcaccattatcgctcaacaccgtactcattatgatcactaccggctccgagggtcccgcacaaaaccaacttctcttcttcctccagtctgaatcc |
220 |
Q |
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| T |
17743756 |
gttttcaccattatcgctcaacaccgtactcattatgatcgctaccggctccgagggtcccacacaaaaccaacttctctccttcctccagtctgaatcc |
17743855 |
T |
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| Q |
221 |
atcggtgatctcaaatccttatgctctcagcttgtttcttctgtgctc |
268 |
Q |
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| T |
17743856 |
accggtgatctcaaatcgttatgctctcaggttgtttcttctgtgctc |
17743903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 19 - 268
Target Start/End: Original strand, 16720430 - 16720679
Alignment:
| Q |
19 |
gcagaatctcatcggaaaatcactgaccaacctcaccaacgtttctctgaacatcaccaaacacttgttatccgataaaaaactcaatgaaaagaacgtt |
118 |
Q |
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|||||||||||||||||||||| | || ||||| |||||| |||| |||||||||||||||||||||||||| || |||||||||| ||| |||||||| |
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| T |
16720430 |
gcagaatctcatcggaaaatcatttacaaacctaaccaacatttccatgaacatcaccaaacacttgttatccaatcaaaaactcaaagaagagaacgtt |
16720529 |
T |
|
| Q |
119 |
gtgttttcaccattatcgctcaacaccgtactcattatgatcactaccggctccgagggtcccgcacaaaaccaacttctcttcttcctccagtctgaat |
218 |
Q |
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|||||||||||||||||||| |||||||| |||| |||||| |||||||||||||||||||| | ||||| |||||||||| ||| ||||||||||||| |
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| T |
16720530 |
gtgttttcaccattatcgcttaacaccgtgctcagtatgattgctaccggctccgagggtcccactcaaaaacaacttctctcctttctccagtctgaat |
16720629 |
T |
|
| Q |
219 |
ccatcggtgatctcaaatccttatgctctcagcttgtttcttctgtgctc |
268 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16720630 |
ccaccggtgatctcaaatccttatgctctcagcttgtttcttctgtgctc |
16720679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 19 - 268
Target Start/End: Original strand, 17697444 - 17697693
Alignment:
| Q |
19 |
gcagaatctcatcggaaaatcactgaccaacctcaccaacgtttctctgaacatcaccaaacacttgttatccgataaaaaactcaatgaaaagaacgtt |
118 |
Q |
| |
|
|||||||||||||||||||||| | || ||||| |||||| |||| |||||||||||||||||||||||||| || |||||||||| ||| |||||||| |
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| T |
17697444 |
gcagaatctcatcggaaaatcatttacaaacctaaccaacatttccatgaacatcaccaaacacttgttatccaatcaaaaactcaaagaagagaacgtt |
17697543 |
T |
|
| Q |
119 |
gtgttttcaccattatcgctcaacaccgtactcattatgatcactaccggctccgagggtcccgcacaaaaccaacttctcttcttcctccagtctgaat |
218 |
Q |
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|||||||||||||||||||| |||||||| |||| |||||| |||||||||||||||||||| | ||||| |||||||||| ||| ||||||||||||| |
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| T |
17697544 |
gtgttttcaccattatcgcttaacaccgtgctcagtatgattgctaccggctccgagggtcccactcaaaaacaacttctctcctttctccagtctgaat |
17697643 |
T |
|
| Q |
219 |
ccatcggtgatctcaaatccttatgctctcagcttgtttcttctgtgctc |
268 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17697644 |
ccaccggtgatctcaaatccttatgctctcagcttgtttcttctgtgctc |
17697693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 19 - 268
Target Start/End: Original strand, 17716363 - 17716612
Alignment:
| Q |
19 |
gcagaatctcatcggaaaatcactgaccaacctcaccaacgtttctctgaacatcaccaaacacttgttatccgataaaaaactcaatgaaaagaacgtt |
118 |
Q |
| |
|
||||||||||||| |||||||||| || ||||| ||||||||||| |||||||||||||||||||||||||| || |||||||||| |||||||| ||| |
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| T |
17716363 |
gcagaatctcatcagaaaatcactcacaaacctaaccaacgtttccatgaacatcaccaaacacttgttatccaatcaaaaactcaaagaaaagaatgtt |
17716462 |
T |
|
| Q |
119 |
gtgttttcaccattatcgctcaacaccgtactcattatgatcactaccggctccgagggtcccgcacaaaaccaacttctcttcttcctccagtctgaat |
218 |
Q |
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||||||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||| | ||||| |||||||||| |||||||||||| |||| |
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| T |
17716463 |
gtgttttcaccattatcgctcaacaccgtgctcagtatgatcgctaccggctccgagggtcccactcaaaaacaacttctctccttcctccagtcagaat |
17716562 |
T |
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| Q |
219 |
ccatcggtgatctcaaatccttatgctctcagcttgtttcttctgtgctc |
268 |
Q |
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|| |||| ||||||||||||||| ||||| ||| ||||||||||||||| |
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| T |
17716563 |
cccccggtaatctcaaatccttatactctcggctggtttcttctgtgctc |
17716612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 19 - 268
Target Start/End: Original strand, 16729303 - 16729552
Alignment:
| Q |
19 |
gcagaatctcatcggaaaatcactgaccaacctcaccaacgtttctctgaacatcaccaaacacttgttatccgataaaaaactcaatgaaaagaacgtt |
118 |
Q |
| |
|
||||||||||||| |||||||||| || ||||| ||||||||||| |||||||||||||||||||||||||| || || ||||||| |||||||||||| |
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| T |
16729303 |
gcagaatctcatcagaaaatcactcacaaacctaaccaacgtttccatgaacatcaccaaacacttgttatccaatcaagaactcaaagaaaagaacgtt |
16729402 |
T |
|
| Q |
119 |
gtgttttcaccattatcgctcaacaccgtactcattatgatcactaccggctccgagggtcccgcacaaaaccaacttctcttcttcctccagtctgaat |
218 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||||||| ||||| ||||| |||||||| | ||||| |||||||||| ||||||||||||||||| |
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| T |
16729403 |
gtgttttcaccattatcgctcaacaccgtgctcagtatgatcgctaccagctccaagggtcccactcaaaaacaacttctctccttcctccagtctgaat |
16729502 |
T |
|
| Q |
219 |
ccatcggtgatctcaaatccttatgctctcagcttgtttcttctgtgctc |
268 |
Q |
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| |||||||||||||||||||| ||||| ||| ||||||||||||||| |
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| T |
16729503 |
ctcccggtgatctcaaatccttatactctcggctggtttcttctgtgctc |
16729552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 19 - 268
Target Start/End: Original strand, 17706375 - 17706624
Alignment:
| Q |
19 |
gcagaatctcatcggaaaatcactgaccaacctcaccaacgtttctctgaacatcaccaaacacttgttatccgataaaaaactcaatgaaaagaacgtt |
118 |
Q |
| |
|
||||||||||||| |||||||||| || ||||| ||||||||||| |||||||||||||||||||||||||| || || ||||||| |||||||||||| |
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| T |
17706375 |
gcagaatctcatcagaaaatcactcacaaacctaaccaacgtttccatgaacatcaccaaacacttgttatccaatcaagaactcaaagaaaagaacgtt |
17706474 |
T |
|
| Q |
119 |
gtgttttcaccattatcgctcaacaccgtactcattatgatcactaccggctccgagggtcccgcacaaaaccaacttctcttcttcctccagtctgaat |
218 |
Q |
| |
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||||||||||||||||||||||||||||| |||| ||||||| ||||| ||||| |||||||| | ||||| |||||||||| ||||||||||||||||| |
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| T |
17706475 |
gtgttttcaccattatcgctcaacaccgtgctcagtatgatcgctaccagctccaagggtcccactcaaaaacaacttctctccttcctccagtctgaat |
17706574 |
T |
|
| Q |
219 |
ccatcggtgatctcaaatccttatgctctcagcttgtttcttctgtgctc |
268 |
Q |
| |
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| |||||||||||||||||||| ||||| ||| ||||||||||||||| |
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| T |
17706575 |
ctcccggtgatctcaaatccttatactctcggctggtttcttctgtgctc |
17706624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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