View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8900_low_55 (Length: 269)
Name: NF8900_low_55
Description: NF8900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8900_low_55 |
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| [»] chr3 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 9 - 269
Target Start/End: Original strand, 53178854 - 53179114
Alignment:
| Q |
9 |
tggaggtctatcatattgtatcaccaacacttagnnnnnnnacttcacacttcattcttcattcacaacatcgcctgcatcaccaacagtcaacagtcac |
108 |
Q |
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| T |
53178854 |
tggaggtctatcatattgtatcaccaacacttagtttttttacttcacacttcattcttcattcacaacatcgcctgcatcaccaacagtcaacaatcac |
53178953 |
T |
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| Q |
109 |
cgaattttgtagtgtatccctcatctttatcttcattcaacatacacacaccacacttgatctaacatcacctgcatcaccaacaagttcatcatcttcc |
208 |
Q |
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| T |
53178954 |
cagattttgtagtgtatccctcatcttcatcttcattcaacatacacacaccacacttgatctaacatcacctgcatcaccaacaagttcatcatcttcc |
53179053 |
T |
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| Q |
209 |
tcaaacaaactcagcccattaaactgaagcgtagcaatagatctggctctatgatattcac |
269 |
Q |
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| T |
53179054 |
tcaaacaaactcaacccattaaactgaagcgtagcaatagatctggctctatgatattcac |
53179114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 6e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 137 - 269
Target Start/End: Complemental strand, 17357772 - 17357632
Alignment:
| Q |
137 |
atcttcattcaacatacacacac--cacacttgatct------aacatcacctgcatcaccaacaagttcatcatcttcctcaaacaaactcagcccatt |
228 |
Q |
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| T |
17357772 |
atcttcattcaacatacacacactccacacttgatctcatcacaacatcacctgcatcaccaacaagttcatcatcttcctcaaacaaactcagcccatt |
17357673 |
T |
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| Q |
229 |
aaactgaagcgtagcaatagatctggctctatgatattcac |
269 |
Q |
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| T |
17357672 |
aaactgaagtgtaacaatagatctggctctatgatattcac |
17357632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 98 - 269
Target Start/End: Complemental strand, 32519591 - 32519412
Alignment:
| Q |
98 |
tcaacagtcaccgaattttgtagtgtatccctcatctttatcttcattcaacatacacacacc--acacttgatct------aacatcacctgcatcacc |
189 |
Q |
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|||||| ||||| ||||| ||||||||||| |||||| ||||||||||||||||||||||| ||||||||||| ||||||| |||| || |
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| T |
32519591 |
tcaacaatcaccagattttatagtgtatcccccatcttcatcttcattcaacatacacacactcaacacttgatctcatcacaacatcattgtcatcccc |
32519492 |
T |
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| Q |
190 |
aacaagttcatcatcttcctcaaacaaactcagcccattaaactgaagcgtagcaatagatctggctctatgatattcac |
269 |
Q |
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| T |
32519491 |
aacaagttcatcatcttcctcaaacaaactcagcccattaaactgaagcgtagcaatagatcaagctctatgatattcac |
32519412 |
T |
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