View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8900_low_68 (Length: 214)
Name: NF8900_low_68
Description: NF8900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8900_low_68 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 204
Target Start/End: Original strand, 2700763 - 2700948
Alignment:
| Q |
19 |
gatacagtgaaggaaccaccgtttccattgatgggtttgtttctgtttgcaacccaaataacttcgggtccaggaatgttgtagtaccaaataccaacgt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2700763 |
gatacagtgaaggaaccaccgtttccattgatgggtttgtttctgtttgcaacccaaataacttcgggtccaggaatgttgtagtaccaaataccaacgt |
2700862 |
T |
|
| Q |
119 |
aacgtgaagaagaattttcaaacccaaagaaacccatcacgaagttgtagccatctgagactaaaacttcaccttctttgtctctg |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2700863 |
aacgtgaagaagaattttcaaacccaaagaaacccatcacgaagttgtagccatctgagactaaaacttcaccttctttgtctctg |
2700948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 31 - 204
Target Start/End: Original strand, 2693073 - 2693246
Alignment:
| Q |
31 |
gaaccaccgtttccattgatgggtttgtttctgtttgcaacccaaataacttcgggtccaggaatgttgtagtaccaaataccaacgtaacgtgaagaag |
130 |
Q |
| |
|
|||||||| || |||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||| ||||| ||||||| |
|
|
| T |
2693073 |
gaaccaccattgccattgatgggtgtgtttctgtttgcaacccaaataacttctggaccaggaatgttgtagtaccaaattccaacataacgagaagaag |
2693172 |
T |
|
| Q |
131 |
aattttcaaacccaaagaaacccatcacgaagttgtagccatctgagactaaaacttcaccttctttgtctctg |
204 |
Q |
| |
|
| | || ||| |||||||||||||| |||||||||| |||||||||| |||||||||||| |||| ||||||| |
|
|
| T |
2693173 |
agtcttgaaaaccaaagaaacccattacgaagttgtgcccatctgagaataaaacttcaccatcttcgtctctg |
2693246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 196
Target Start/End: Original strand, 14522140 - 14522315
Alignment:
| Q |
21 |
tacagtgaaggaaccaccgtttccattgatgggtttgtttctgtttgcaacccaaataacttcgggtccaggaatgttgtagtaccaaataccaacgtaa |
120 |
Q |
| |
|
||||||||| ||||||| ||| ||||| |||||| ||||||| |||||||||||||||| | |||||||| ||||| |||||||||||||| || ||| |
|
|
| T |
14522140 |
tacagtgaaagaaccacggttgccatttatgggtgtgtttctatttgcaacccaaataatctgcggtccaggtatgttatagtaccaaataccgacataa |
14522239 |
T |
|
| Q |
121 |
cgtgaagaagaattttcaaacccaaagaaacccatcacgaagttgtagccatctgagactaaaacttcaccttctt |
196 |
Q |
| |
|
|| |||||||| || | || |||||||||||||| | |||||| | |||||||||| |||||| |||||||||| |
|
|
| T |
14522240 |
cgagaagaagagttgccgaaaccaaagaaacccatagcaaagttgaaaccatctgagaataaaacatcaccttctt |
14522315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University