View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8900_low_8 (Length: 455)
Name: NF8900_low_8
Description: NF8900
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8900_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 9 - 437
Target Start/End: Complemental strand, 53789931 - 53789503
Alignment:
| Q |
9 |
tggtggtcgacgggttatgcagtaagtgattcagtgggaaggttaagacacggcaatccgggcgatcatattggactagtgctaggttcctgttcggcgt |
108 |
Q |
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| T |
53789931 |
tggtggtcgacgggttatgcagtaagtgattcagtgggaaggttaagacacggcaatccgggcgatcatattggactagtgctaggttcctgttcggcgt |
53789832 |
T |
|
| Q |
109 |
tgatcgctgaaggtgcactgtgacgaatttgggatcggagatgagggaattccaagacttattcaaatactttaattgcaacaaagatttcactggaagc |
208 |
Q |
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|||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
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| T |
53789831 |
tgatagctgaaggtgcaatttgacgaatttgggatcggagatgagggaattccaagacttattcacacactttaattgcaacaaagatttcactggaagc |
53789732 |
T |
|
| Q |
209 |
aatgatagaacttccacgatcaggtcatcggggaggtctatgccccgcattctgatttctgagtgcttttggaggagtgccgtgatccatttgaactggg |
308 |
Q |
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| T |
53789731 |
aatgatagaacttccacgatcaggtcatcggggaggtctatgccccgcattctgatttctgagtgcttttggaggagtgccgtgatccatttgaactggg |
53789632 |
T |
|
| Q |
309 |
agagatagagatgcagaaaccaaaaaagtgccattcaaaatattgatgcagaaaccaacttaccctcgtaaaaattgaaaacaaaggaagaagaaactag |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
53789631 |
agagatagagatgcagaaaccaaaaaagtgccattcaaaatattgatgcagaaaccaacttaccctcgtaaaaattgaaaacaaaggaggaagaaactag |
53789532 |
T |
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| Q |
409 |
tgttgttgatggttgagatagtagtgaac |
437 |
Q |
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| T |
53789531 |
tgttgttgatggttgagatagtagtgaac |
53789503 |
T |
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