View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8901_high_14 (Length: 452)
Name: NF8901_high_14
Description: NF8901
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8901_high_14 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 159; Significance: 2e-84; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 256 - 445
Target Start/End: Original strand, 13199130 - 13199320
Alignment:
| Q |
256 |
gatcaaccattttactctttcagcatagatatttgtcgacaaaatgatgactatagactctttttggtttgtttgagctatgattctcttgttcatcatc |
355 |
Q |
| |
|
||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13199130 |
gatcaaccattttactcttccagcctagatatttatcgacaaaatgatgactatagactctttttggtttgtttgagctatgattctcttgttcatcatc |
13199229 |
T |
|
| Q |
356 |
tgacatgactctcaaggataagtccatttttaattcacctacaaatagtgtgtgtcacacaca-ttttttaatctcctttttcctctgctt |
445 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||| ||||| |
|
|
| T |
13199230 |
tgacatgactctcaaggataagtccatttttaattcacctataaatagtgtgtgtcacacacattttttttatctcctttttcctttgctt |
13199320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 117 - 192
Target Start/End: Original strand, 13198991 - 13199066
Alignment:
| Q |
117 |
ggagattttgaaaaaatttcacaaattctctgaaaatacggaccctttcaccaataaatcaagatcaaattctacg |
192 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13198991 |
ggagattttgaaaaattttcacaaattctctgaaaatacggaccctttcaccaataaatcaagatcaaattctacg |
13199066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 318 - 404
Target Start/End: Complemental strand, 13198829 - 13198742
Alignment:
| Q |
318 |
tttggtttgtttgagctatgattctcttgttcatcatctgacatgactctcaaggataagtccatttttaat-tcacctacaaatagt |
404 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| |||| ||||| |||||| |||||||||| || |||||||| |||||| |
|
|
| T |
13198829 |
tttgatttgtttgagctatgattctcttgttcatcatctaacatacctctcgaggataggtccatttttcatctcacctaccaatagt |
13198742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University